PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g02590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 39727.3 Da PI: 6.2442 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68 | 1.7e-21 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a++k++g CA05g02590 119 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEDAARAYDEAALKFRG 168 7********.**********76....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.1E-39 | 119 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.475 | 119 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-23 | 119 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-14 | 119 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-33 | 119 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-12 | 120 | 131 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-29 | 127 | 178 | No hit | No description |
PRINTS | PR00367 | 3.4E-12 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MFSGNINREE EMSVMVSALT RVITGEDRIL NQENNNSDNI IIGSSSLNEF SGGVGEKRGR 60 EEHQYFLSDI SSSSGGEDSS NSKTIASNTP TKESTFIYIT PTYDHNTTNI IDYNQPRRRY 120 RGVRQRPWGK WAAEIRDPYK ATRVWLGTFD TAEDAARAYD EAALKFRGSK AKLNFPENVR 180 LLPTSSTPRQ NDVGNTGHPM EKQFLAGTFP KDPMENNTNN VEFLTDTFPK NSMGNTHVSS 240 IVSPDDSPNT LSTMSFFPSS NPIVHTQLPN SNINPPFFLN DDFQMVHSSS SLLNQSMFST 300 TFQYSSSSSS SSSSSSSRVP FVPNMYFHGG SQRTSQSSEC DFRATSSDSA HHPSSSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-25 | 118 | 179 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU856251 | 1e-133 | CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 1e-133 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554386.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A1U8F6T3 | 0.0 | A0A1U8F6T3_CAPAN; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2G2ZFP0 | 0.0 | A0A2G2ZFP0_CAPAN; ethylene-responsive transcription factor ERF110-like | ||||
STRING | PGSC0003DMT400060659 | 1e-162 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 6e-22 | ERF family protein |