PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g01840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 37461.3 Da PI: 4.7042 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 209 | 259 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f t eeAa a+++a++ ++g CA05g01840 209 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFNTGEEAALAYDQAALTMRG 259 799******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.20E-27 | 208 | 269 | No hit | No description |
SMART | SM00380 | 2.5E-34 | 209 | 273 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-13 | 209 | 259 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 209 | 269 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.47 | 209 | 267 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-28 | 209 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 210 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 233 | 249 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEFPSPQIQY PNFSFFQDQL PLSWNDQLFL DEHFSNYPWE VDSVDQSDNH QLPRSSSFSD 60 TYSSKGCYEW KVDSVDQSDD RQLPRSSSFP ETNSSKGCYA WKVDSVDQRS SFSDTNSSKG 120 CYAWKVDSVD QSDDHQLPRS SSFSDTNSSK GNYPLQTIDS SSQEDNDHQL LRSSSFSDTN 180 SSKESNNHDI EEVTSSHDSN PTRSNEKKHY IGVRKRPWGK YAAEIRDSTR NGIRVWLGTF 240 NTGEEAALAY DQAALTMRGP LALLNFPINK VRESLENINY FCEDXCVKHR RNRKKGIKEN 300 NNNNNNNNVL VLEDLGVELL DELLMSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 208 | 268 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 3e-71 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 3e-71 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574513.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A2G2ZFL1 | 0.0 | A0A2G2ZFL1_CAPAN; Ethylene-responsive transcription factor 15 | ||||
STRING | PGSC0003DMT400060732 | 1e-101 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-35 | ethylene response factor 1 |