PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g01670

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 536aa MW: 59497.4 Da PI: 6.0317

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g01670	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	398.6	6.5e-122	166	535	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++ Aeav++ d + a+ lL+ l++++s +g+pmqRl ay++e+L+arl++s+s +yk+l+++e + sse l+++ ++++++P++kf+++ aN CA05g01670 166 NDLLISSAEAVAEADVTTAEILLSVLEKRVSISGEPMQRLSAYMLEGLRARLLSSGSIIYKKLKCNEPT---SSELLSYMDVLYHICPYFKFAYMSANV 261 689***************************************************************9...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 I ea+++e+r+H+iDf+i qG QW+ +++ La Rp+gpp lRiTgv++++s + l+ +gerLa +Ae++gv fef+ +a + +++le+L+v+ CA05g01670 262 VIGEAMKNESRIHVIDFQIAQGNQWVFFIHYLARRPGGPPFLRITGVDDSQSAhaRGGGLQLVGERLATIAESCGVLFEFHN-AALSGCQVKLEDLQVR 359 *********************************************9988889999*******************.8999******** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +gE+laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v +veqe+++n+++Fl rf e+l+y+ a+f+s+++ pr+++ ri+ E+++++r++vn CA05g01670 360 HGESLAVNFPFMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVSLVEQEMNTNTAPFLLRFRETLDYHKAMFESVDVARPRDDKLRISAEEHCIARDVVN 458 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++acega+r+er+e ++kW++rl++aGF++ pls ++ + ++ +l++++s+ y++ e++g l+lgWk+r+L + SaW+ CA05g01670 459 LIACEGADRVERQEPFGKWKSRLTMAGFTQCPLSPSVGEAINGMLKEYSSN-YSLAESQGVLYLGWKTRALATSSAWQ 535 *********************************************77.***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.387	139	516	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-119	166	535	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MGSAHELYHQ PMQQVQQYYT PCRAFDNSIY NDSSSSGTQI SLKTQNEQFF IMDSFPVTDC 60 AIYDAAPSVS VSSNRSPFSP QCSPSCMSEP RRSFENACIS SASGCSGADD GSGKKHVLRE 120 LNNKLLRPEY DIDDSCSCSF DDAVAKSSSL TWRNQVLDVA SRLDLNDLLI SSAEAVAEAD 180 VTTAEILLSV LEKRVSISGE PMQRLSAYML EGLRARLLSS GSIIYKKLKC NEPTSSELLS 240 YMDVLYHICP YFKFAYMSAN VVIGEAMKNE SRIHVIDFQI AQGNQWVFFI HYLARRPGGP 300 PFLRITGVDD SQSAHARGGG LQLVGERLAT IAESCGVLFE FHNAALSGCQ VKLEDLQVRH 360 GESLAVNFPF MLHHMPDESV STMNHRDRLL RLVKSLSPKI VSLVEQEMNT NTAPFLLRFR 420 ETLDYHKAMF ESVDVARPRD DKLRISAEEH CIARDVVNLI ACEGADRVER QEPFGKWKSR 480 LTMAGFTQCP LSPSVGEAIN GMLKEYSSNY SLAESQGVLY LGWKTRALAT SSAWQ*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MGSAHELYHQ PMQQVQQYYT PCRAFDNSIY NDSSSSGTQI SLKTQNEQFF IMDSFPVTDC  60
AIYDAAPSVS VSSNRSPFSP QCSPSCMSEP RRSFENACIS SASGCSGADD GSGKKHVLRE  120
LNNKLLRPEY DIDDSCSCSF DDAVAKSSSL TWRNQVLDVA SRLDLNDLLI SSAEAVAEAD  180
VTTAEILLSV LEKRVSISGE PMQRLSAYML EGLRARLLSS GSIIYKKLKC NEPTSSELLS  240
YMDVLYHICP YFKFAYMSAN VVIGEAMKNE SRIHVIDFQI AQGNQWVFFI HYLARRPGGP  300
PFLRITGVDD SQSAHARGGG LQLVGERLAT IAESCGVLFE FHNAALSGCQ VKLEDLQVRH  360
GESLAVNFPF MLHHMPDESV STMNHRDRLL RLVKSLSPKI VSLVEQEMNT NTAPFLLRFR  420
ETLDYHKAMF ESVDVARPRD DKLRISAEEH CIARDVVNLI ACEGADRVER QEPFGKWKSR  480
LTMAGFTQCP LSPSVGEAIN GMLKEYSSNY SLAESQGVLY LGWKTRALAT SSAWQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-53	173	534	27	378	Protein SCARECROW
5b3h_A	3e-53	173	534	26	377	Protein SCARECROW
5b3h_D	3e-53	173	534	26	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269\|PubMed:16680434}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269\|PubMed:16680434}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016572015.1	0.0	PREDICTED: scarecrow-like protein 13
Refseq	XP_016572016.1	0.0	PREDICTED: scarecrow-like protein 13
Swissprot	Q9M0M5	0.0	SCL13_ARATH; Scarecrow-like protein 13
TrEMBL	A0A2G2XYV9	0.0	A0A2G2XYV9_CAPAN; Scarecrow-like protein 13
STRING	PGSC0003DMT400060553	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA681	24	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17230.1	1e-176	SCARECROW-like 13