PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g23340
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 391aa    MW: 44111.5 Da    PI: 6.7083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g23340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.7e-54221491128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +++
  CA04g23340  22 LPPGFRFHPTDEELITFYLASKVFNGSFCG-IQIAEVDLNRCEPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAtNKA 119
                 79*************************877.67***************8888999***************************************96778 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 l g+kktLvfykgrap+gekt+Wvmheyrl
  CA04g23340 120 LLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6219171IPR003441NAC domain
PROSITE profilePS5100559.09922171IPR003441NAC domain
PfamPF023659.3E-2823149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMLAMEEILC ELNREDENGQ GLPPGFRFHP TDEELITFYL ASKVFNGSFC GIQIAEVDLN  60
RCEPWELPEV AKMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR EVYSATNKAL  120
LGMKKTLVFY KGRAPRGEKT KWVMHEYRLD GDFSYRYSSK EEWVICRILH KVGIGEKKNP  180
ILYEAGGGYP TLKTWSSAAA STFHNTALNS PLTPNPKTST NNTTTLWQKQ QAESLQILHN  240
SSAVQSLQNL YLFHPHENDL LKSLFINSNN NNVSQTNLFP MNNNNGTTPT INNSATTKQD  300
HVDTNKNSSN MLFINQQLCT SSEKNEAETM KTEGNYSGCY INDQNAYGMM NISDWSSLGG  360
MEGISCNFNN NVVMDNCPIK IAAESWPLNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-502217717171NO APICAL MERISTEM PROTEIN
1ut4_B3e-502217717171NO APICAL MERISTEM PROTEIN
1ut7_A3e-502217717171NO APICAL MERISTEM PROTEIN
1ut7_B3e-502217717171NO APICAL MERISTEM PROTEIN
3swm_A4e-502217720174NAC domain-containing protein 19
3swm_B4e-502217720174NAC domain-containing protein 19
3swm_C4e-502217720174NAC domain-containing protein 19
3swm_D4e-502217720174NAC domain-containing protein 19
3swp_A4e-502217720174NAC domain-containing protein 19
3swp_B4e-502217720174NAC domain-containing protein 19
3swp_C4e-502217720174NAC domain-containing protein 19
3swp_D4e-502217720174NAC domain-containing protein 19
3ulx_A4e-50141777174Stress-induced transcription factor NAC1
4dul_A3e-502217717171NAC domain-containing protein 19
4dul_B3e-502217717171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4351590.0FJ435159.1 Solanum tuberosum CUP-SHAPED COTYLEDON3 (CUC3) mRNA, complete cds.
GenBankJF4393740.0JF439374.1 Solanum chacoense cup-shaped cotlyedon 3 (CUC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571397.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8514e-99NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1U8GJD30.0A0A1U8GJD3_CAPAN; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2G2ZSW50.0A0A2G2ZSW5_CAPAN; protein CUP-SHAPED COTYLEDON 3
STRINGXP_009616121.11e-175(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-99NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]