PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g22790

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 907aa MW: 101491 Da PI: 5.4752

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g22790	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.2e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ CA04g22790 588 AEKTITLQILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-25	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.11E-24	800	890	No hit	No description
PROSITE profile	PS51745	26.511	805	889	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.4E-22	805	884	No hit	No description
SMART	SM00666	1.1E-25	805	888	IPR000270	PB1 domain
Pfam	PF00564	1.5E-19	807	887	IPR000270	PB1 domain
CDD	cd06407	1.75E-40	807	888	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence Send to blast
MDESVIPSNS LLTTPSDYLM DLDYMDGLLL EGCWLETADG SEFLQHSPAM FNAPFDSSFM 60 WPTTIDANNV EFNGIPSKDA QQEKQRPSFT ENMSINHSQE LSYAKVQPFG ENMNNAMCTS 120 GLSENHLVEA PELNKRWWIG PKASSSVMDR LIWALGHIRD CSRDKGILLQ LWVPINRDGR 180 RVLSTTDQPF LLDLNCPQLA NYREVSANYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR 240 FFRSEEYPRV EHAQLYDVRG TLAVPVFEQG SRNCLGVIEV VMTKQKIKYR SELESVCEAL 300 KAVDLSTSEV STIQDAKVCD LSYQAALPEV LEVLMSACET HGLPLAQTWV PCVQQGKGGC 360 RHSEENLIHC VSTEDSACYV ADPRVQGFHE ACSEHHLLKG QGVVGKAFMT NQPCFSDDLT 420 SYSKSEYPLS HYAKMFGLQA AVAIRLRSTL TGSSDFVLEF FLPADCRNPE EHRKMLTSLS 480 IIIQNVCRTL RVVTDKELQE ETVSMDEVAN HTVEQHKEHT ETSQERTSWT SCDAEFQESS 540 VISAFQDEKP DELMRKDAME FRHHKDAGSG IGASRNMGRT GDRRRAKAEK TITLQILQQY 600 FAGSLKDAAK SIGVCPTTLK RICRQHGIKR WPSRKIKKVG HSLQKIRRVI DSVEGASGTL 660 QIESFYSNFP ELASPNASRM SPLANSKLNE HPMALNTQQE GCITSPNNAD VSKSPSSSCS 720 RSSSSSQCCS SGTKPQSHPL NTCDEDQIIQ EESVDNSMKR VRSEPELLHL SSEGPKTIPR 780 SQSHACVAEN PKSEKKGPSI SQEEAPRVKV TYGEEKIRFR MQNSWRYSDL LREITRRFGI 840 DDPSGLQLKY LDDDSEWVLL TCDADLEECI DVCMSSQNQM IKLILVQDSQ HHFGSSFGSS 900 SPILVQ*

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence Send to blast

MDESVIPSNS LLTTPSDYLM DLDYMDGLLL EGCWLETADG SEFLQHSPAM FNAPFDSSFM  60
WPTTIDANNV EFNGIPSKDA QQEKQRPSFT ENMSINHSQE LSYAKVQPFG ENMNNAMCTS  120
GLSENHLVEA PELNKRWWIG PKASSSVMDR LIWALGHIRD CSRDKGILLQ LWVPINRDGR  180
RVLSTTDQPF LLDLNCPQLA NYREVSANYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR  240
FFRSEEYPRV EHAQLYDVRG TLAVPVFEQG SRNCLGVIEV VMTKQKIKYR SELESVCEAL  300
KAVDLSTSEV STIQDAKVCD LSYQAALPEV LEVLMSACET HGLPLAQTWV PCVQQGKGGC  360
RHSEENLIHC VSTEDSACYV ADPRVQGFHE ACSEHHLLKG QGVVGKAFMT NQPCFSDDLT  420
SYSKSEYPLS HYAKMFGLQA AVAIRLRSTL TGSSDFVLEF FLPADCRNPE EHRKMLTSLS  480
IIIQNVCRTL RVVTDKELQE ETVSMDEVAN HTVEQHKEHT ETSQERTSWT SCDAEFQESS  540
VISAFQDEKP DELMRKDAME FRHHKDAGSG IGASRNMGRT GDRRRAKAEK TITLQILQQY  600
FAGSLKDAAK SIGVCPTTLK RICRQHGIKR WPSRKIKKVG HSLQKIRRVI DSVEGASGTL  660
QIESFYSNFP ELASPNASRM SPLANSKLNE HPMALNTQQE GCITSPNNAD VSKSPSSSCS  720
RSSSSSQCCS SGTKPQSHPL NTCDEDQIIQ EESVDNSMKR VRSEPELLHL SSEGPKTIPR  780
SQSHACVAEN PKSEKKGPSI SQEEAPRVKV TYGEEKIRFR MQNSWRYSDL LREITRRFGI  840
DDPSGLQLKY LDDDSEWVLL TCDADLEECI DVCMSSQNQM IKLILVQDSQ HHFGSSFGSS  900
SPILVQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU326379	0.0	CU326379.2 S.lycopersicum DNA sequence from clone LE_HBa-68N5 on chromosome 4, complete sequence.
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568258.1	0.0	PREDICTED: protein NLP5
Refseq	XP_016568259.1	0.0	PREDICTED: protein NLP5
Refseq	XP_016568260.1	0.0	PREDICTED: protein NLP5
Refseq	XP_016568261.1	0.0	PREDICTED: protein NLP5
Refseq	XP_016568262.1	0.0	PREDICTED: protein NLP5
Refseq	XP_016568263.1	0.0	PREDICTED: protein NLP5
Refseq	XP_016568264.1	0.0	PREDICTED: protein NLP5
Refseq	XP_016568265.1	0.0	PREDICTED: protein NLP5
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A1U8GAA2	0.0	A0A1U8GAA2_CAPAN; Protein NLP5
TrEMBL	A0A1U8GHR1	0.0	A0A1U8GHR1_CAPAN; protein NLP5
STRING	PGSC0003DMT400025657	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein