PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g21720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 343aa MW: 37067.9 Da PI: 8.7509 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2e-05 | 97 | 119 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ + H CA04g21720 97 ACPECGEVFPKIESLEHHQAVkH 119 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 96 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.995 | 96 | 124 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.63E-20 | 121 | 338 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 2.5E-8 | 121 | 338 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MHRDVVHGNT RVVHRADNSP ESSSLGQETR LLSKNKTSHH GPSSSSSRSL AKSNGGGSST 60 YTTSSRGMQF RKLSGCYECH MIVDPSRYPL PRSTICACPE CGEVFPKIES LEHHQAVKHA 120 VSELGPEDSS RNIVEIIFKS SWLKKDNPIC KIERILKVYN TKRTIQRFED CRDAVKIHAV 180 ATGKKNPRCA ADGNELLRFY CTSLTCSLGA RGSSSLCGSV PGCGVCTTIR HGFQGNKISG 240 VRTTASSGRA HDCLGSGTAR RRAMIVCRVI AGRVKQTKDV VTSPTMEEEN CSTSDSGSGS 300 GSTAYDSVAG YAGIYSNLEE LYVFNPRAIL PCFVVIYEAL ES* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ809740 | 0.0 | FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence. | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016568396.1 | 0.0 | PREDICTED: uncharacterized protein LOC107866896 | ||||
TrEMBL | A0A1U8GAQ6 | 0.0 | A0A1U8GAQ6_CAPAN; uncharacterized protein LOC107866896 | ||||
TrEMBL | A0A2G2ZSL3 | 0.0 | A0A2G2ZSL3_CAPAN; Uncharacterized protein | ||||
STRING | Solyc04g081370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5195 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-141 | C2H2-like zinc finger protein |