PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g20070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 40958.1 Da PI: 4.4187 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.6 | 1.4e-11 | 17 | 118 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktL 106 h td+e++ L + +g++++ +vi + + y ++P++L+ + +fF++r+++ + tk+g W+a+g e+++ +++ g ++t+ CA04g20070 17 HWTDDEIILS-LDQINRGSPIPD-DVIVD-NPYLYDPSNLQ-------DGAWFFVRRAEE--------KETKHGLWRAKGAACEIFA-NSAISGWRTTF 96 6799999955.999999999988.77766.89999*****6.......345677777664........35789**************.999******** PP NAM 107 vfykgrapkgektdWvmheyrl 128 f + +ap ekt W+++ey++ CA04g20070 97 EFSQIQAPIEEKTVWMIQEYKI 118 ********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-17 | 8 | 138 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.508 | 9 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-6 | 17 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MHPLAPSAPP PGFMSSHWTD DEIILSLDQI NRGSPIPDDV IVDNPYLYDP SNLQDGAWFF 60 VRRAEEKETK HGLWRAKGAA CEIFANSAIS GWRTTFEFSQ IQAPIEEKTV WMIQEYKITL 120 KGQHDQTKSQ ESALCRVFSC CNETKPEQRD DLDTLDFLSL MSVFELHTSS SNGQRSIGEP 180 QVNSQAEGVV SSLIDKSGDH SDDDCILRGD YLELNDLVDA ASHSSSSESS SRPSFASDEY 240 FDSMALLRDL DDDEKKEDLN GNGSNGSYNT MTCVLQPAPL ESLVKGGEAA AEETQQAPAI 300 NKSEPPSETS TDQAAKRLKA ERMDEGPSHS CRPTTSSSSS SSSSDEPGRV ATRAEKRTKK 360 LMKYFLCFIP F* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016568633.1 | 0.0 | PREDICTED: uncharacterized protein LOC107867050 isoform X2 | ||||
TrEMBL | A0A1U8GIT4 | 0.0 | A0A1U8GIT4_CAPAN; uncharacterized protein LOC107867050 isoform X2 | ||||
STRING | PGSC0003DMT400071597 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11207 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 4e-12 | NAC domain containing protein 38 |