PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g19870

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 593aa MW: 67139.9 Da PI: 8.2611

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g19870	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	364	401	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps++++ L++++gL+++qV++WF N R + CA04g19870 364 FEHflHPYPSEADKHLLSRQTGLSKNQVSNWFINARVR 401 564459******************************88 PP
2	BELL	105.4	3.8e-34	224	295	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e q++k kLls+l+e + rY +y+eq+q++++sF+ v+g+g+a+pYt+lA+ka+SrhFrc+kdai+ q+ CA04g19870 224 ERSEYQRRKIKLLSMLDEAYARYTRYCEQMQAMVNSFDSVIGYGAAAPYTALAQKAMSRHFRCIKDAIVAQL 295 789******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.5E-56	157	293	IPR006563	POX domain
Pfam	PF07526	3.3E-47	163	292	IPR006563	POX domain
PROSITE profile	PS50071	12.422	342	405	IPR001356	Homeobox domain
CDD	cd00086	1.51E-11	345	406	No hit	No description
SMART	SM00389	1.8E-9	345	409	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	346	412	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	348	411	IPR009057	Homeodomain-like
Pfam	PF05920	6.3E-18	362	401	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MQLPLMNPHI KPSSPPRASS SLHMLLPNSV DTNNLLHHQG FHLLNPATVE PPSQFTWIPG 60 SSSGEDDSTR IGRVVDGHGL SLSLSRNFEA AAKLEDLRIG NGGIYLQNNQ GLLSPINNNH 120 HHHHQLLHSG VVMDHRTTSP HTNVHHQIHV GYAASSPRIS NALRNSRYVK AAQELLEEFC 180 CVGRGNFKNQ RVKKYDDENP NSNSESEDHR GSSKDNHPPL SAAERSEYQR RKIKLLSMLD 240 EAYARYTRYC EQMQAMVNSF DSVIGYGAAA PYTALAQKAM SRHFRCIKDA IVAQLKQTCK 300 YLGEKDVTGT SGLTKGETPR LKVLDQKLRQ QKALHQMGML DSDAWRPQRG LPERSVNVLR 360 AWLFEHFLHP YPSEADKHLL SRQTGLSKNQ VSNWFINARV RLWKPMVEEM YQQETKEEET 420 DQEDDNQDQQ QHQQEKQAQI PMHDKTSNMA TSSTTTTMPL SSSARSEFNA NERDPSKNII 480 NYRQYALGNQ LVMLQSDDTA TTSSANPYFM XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 540 XXXXXXXXXX XXXXXAFGSQ QAGDVSLTLG LRHSENVPRK ATQFQLRDFG AY*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MQLPLMNPHI KPSSPPRASS SLHMLLPNSV DTNNLLHHQG FHLLNPATVE PPSQFTWIPG  60
SSSGEDDSTR IGRVVDGHGL SLSLSRNFEA AAKLEDLRIG NGGIYLQNNQ GLLSPINNNH  120
HHHHQLLHSG VVMDHRTTSP HTNVHHQIHV GYAASSPRIS NALRNSRYVK AAQELLEEFC  180
CVGRGNFKNQ RVKKYDDENP NSNSESEDHR GSSKDNHPPL SAAERSEYQR RKIKLLSMLD  240
EAYARYTRYC EQMQAMVNSF DSVIGYGAAA PYTALAQKAM SRHFRCIKDA IVAQLKQTCK  300
YLGEKDVTGT SGLTKGETPR LKVLDQKLRQ QKALHQMGML DSDAWRPQRG LPERSVNVLR  360
AWLFEHFLHP YPSEADKHLL SRQTGLSKNQ VSNWFINARV RLWKPMVEEM YQQETKEEET  420
DQEDDNQDQQ QHQQEKQAQI PMHDKTSNMA TSSTTTTMPL SSSARSEFNA NERDPSKNII  480
NYRQYALGNQ LVMLQSDDTA TTSSANPYFM XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXAFGSQ QAGDVSLTLG LRHSENVPRK ATQFQLRDFG AY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	351	409	5	63	Homeobox protein Meis2
3k2a_B	2e-16	351	409	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-102	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568677.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-128	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2G3CQ06	0.0	A0A2G3CQ06_CAPCH; Homeobox protein BEL1-like protein
STRING	XP_009773433.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-123	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]