PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g19220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 29316.5 Da PI: 8.4507 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.4e-19 | 34 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W++I++++ gR++k+c++rw + CA04g19220 34 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 79 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.3e-18 | 88 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ CA04g19220 88 PFSPSEDETILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 130 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.836 | 29 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.71E-32 | 32 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 33 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-18 | 34 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 35 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.42E-15 | 36 | 78 | No hit | No description |
SMART | SM00717 | 5.4E-16 | 85 | 133 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.824 | 86 | 135 | IPR017930 | Myb domain |
CDD | cd00167 | 3.24E-12 | 88 | 131 | No hit | No description |
Pfam | PF00249 | 5.8E-15 | 88 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 88 | 134 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDFFNRCSTS TSSSSESSSS ESTPRNDNKA EKIKGPWSAE EDKILTKLVE RYGARNWSLI 60 SKYIKGRSGK SCRLRWCNQL SPNVEHRPFS PSEDETILAA HAKYGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRYQQLLQ QQNSGQMVNG LEFRSGSGSG SGMEYMNVDE SPKGNTNNYA 180 TTMTTMAQCN YTSGVWRNNN NNYGGGECDD PMTTLSLAPP GMAGEEMPER KTESFPAGFW 240 DVMRDVIAKE VREYVASTGF PN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-40 | 31 | 134 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 3e-49 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571462.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1U8GJJ8 | 0.0 | A0A1U8GJJ8_CAPAN; Transcription factor MYB44 | ||||
TrEMBL | A0A2G2ZRR7 | 0.0 | A0A2G2ZRR7_CAPAN; transcription factor MYB44-like | ||||
STRING | Solyc04g079360.1.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 9e-57 | myb domain protein 77 |