PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g18380
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 150aa    MW: 16922.1 Da    PI: 9.1813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g18380genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-171766255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  CA04g18380 17 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 66
                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-201775IPR016177DNA-binding domain
SMARTSM003801.6E-361780IPR001471AP2/ERF domain
PROSITE profilePS5103221.9971774IPR001471AP2/ERF domain
PfamPF008471.4E-101866IPR001471AP2/ERF domain
PRINTSPR003671.1E-111829IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-291875IPR001471AP2/ERF domain
CDDcd000183.63E-271875No hitNo description
PRINTSPR003671.1E-115676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MMEGEKRKQR QHQQDKPYRG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP VAAARAYDTA  60
VFYLRGPSAR LNFPECIVDD LAIHDLSAAS IRKKATEVGA RVDALQTAIH NSAAAPHAES  120
NCNSSNMRST RVMMNPDLNE YPESCEEDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-151474263ATERF1
3gcc_A4e-151474263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258581e-117JN125858.1 Solanum tuberosum dehydration-responsive element-binding protein DREB2 (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568791.11e-109PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ9FH945e-51ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1U8GBU21e-108A0A1U8GBU2_CAPAN; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2G2VBV01e-108A0A2G2VBV0_CAPBA; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2G2Y0I91e-108A0A2G2Y0I9_CAPAN; ethylene-responsive transcription factor ERF010-like
TrEMBLA0A2G3CPX21e-108A0A2G3CPX2_CAPCH; Ethylene-responsive transcription factor RAP2-1
STRINGSolyc04g078640.1.13e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-53DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]