PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g17900

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 356aa MW: 39785 Da PI: 4.6957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g17900	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.3e-10	280	320	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN+++ L+ l+P+ +K++ +++Le+Av Y+k Lq CA04g17900 280 RRRRERINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 320 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.034	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-14	271	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	275	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-11	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	280	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEHVGAFFDE EWESLSKLFS SNETADFMLQ LQGDHGSLLS MNGCDNAGSG YGTEAFCQLS 60 DDPNNNFQYF SQESSITSCG SDPGMFFTNN SSHEHLQHSN NIDDVNNQLL QVAINNHPDD 120 QSIDYFVVDD KNLENLSINQ DFQTDMTNKE EMICEQLDNA GISPVSNKEM QLKRKLEKVA 180 PENPKKKARG SQDAQKSTKK KAQPKKGKKN QKMTQIDNEE GEEETINADN QIGQSSSCCS 240 SEDDSNASQE LKGGAISSNT KGKSRASRGA ATDPQSLYAR RRRERINERL RILQNLVPNG 300 TKVDISTMLE EAVTYVKFLQ LQIKLLSSDE LWMYAPLAYH GMDIGIYQQM LPHLQ*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEHVGAFFDE EWESLSKLFS SNETADFMLQ LQGDHGSLLS MNGCDNAGSG YGTEAFCQLS  60
DDPNNNFQYF SQESSITSCG SDPGMFFTNN SSHEHLQHSN NIDDVNNQLL QVAINNHPDD  120
QSIDYFVVDD KNLENLSINQ DFQTDMTNKE EMICEQLDNA GISPVSNKEM QLKRKLEKVA  180
PENPKKKARG SQDAQKSTKK KAQPKKGKKN QKMTQIDNEE GEEETINADN QIGQSSSCCS  240
SEDDSNASQE LKGGAISSNT KGKSRASRGA ATDPQSLYAR RRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVTYVKFLQ LQIKLLSSDE LWMYAPLAYH GMDIGIYQQM LPHLQ*

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-115	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568862.1	0.0	PREDICTED: transcription factor bHLH84-like
Swissprot	Q84WK0	5e-52	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A1U8GC08	0.0	A0A1U8GC08_CAPAN; Transcription factor bHLH85
TrEMBL	A0A2G2ZRD4	0.0	A0A2G2ZRD4_CAPAN; transcription factor bHLH84-like
TrEMBL	A0A2G3CPR3	0.0	A0A2G3CPR3_CAPCH; Transcription factor bHLH85
STRING	PGSC0003DMT400055446	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27740.1	1e-39	root hair defective 6-like 4

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]