PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g17180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 352aa    MW: 39242.1 Da    PI: 4.3283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g17180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11185228654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  CA04g17180 185 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 228
                 589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-16182247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9185228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15186242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.08E-5186232No hitNo description
CDDcd048731.79E-4277318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEYYNENSSL EELLSLRSDS WDTTSVVPME MSDFYNNVLN YDSSCFVDNN NIPLSCSTTS  60
NSFEGYSCNL PFDHQNLINS FYSPFCDELS PPELTDNTSS FPSQEDFSSI LDDEVGNYSF  120
QNLEMGNNNA NTNNNNVVIP CKLEEIQVCE GTTAAAGGTS FNIGLCPEIR KTKSKKIDGQ  180
PSKNLMAERR RRKRLNDRLS MLRSVVPKIS KMDRTSILGD TIDYMKELLE KINKLQEEME  240
LEPNQLSLMS IFKDVKPNEM LVRNSPKFDV ERRGVDTKVE ICCAGKPGLL LSTVTTLEAL  300
GLELQQCVIS SFSDFAMQAS CSEGMEQGGV VSSEDIKQAL FRNAGYGGRC L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187194ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-103HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571505.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL13e-85BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1U8GK240.0A0A1U8GK24_CAPAN; Transcription factor bHLH93
TrEMBLA0A2G2ZR030.0A0A2G2ZR03_CAPAN; transcription factor bHLH93-like
STRINGPGSC0003DMT4000163600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-87beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]