PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g16680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37347.2 Da PI: 8.3423 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl CA04g16680 14 RGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ CA04g16680 70 GFSDEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.124 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.59E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.72E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.05 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.04E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSDEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK 120 QRQKQGSRKG KEIKSMSSIS TSNNLNQNPC WPELQPLPYS NNEPRFINND HTSIRKLLIK 180 LGGKFSENDQ LTNVVPNSHE YPIDNSSSMQ LMYQDHINLI SSAPIDHNVF NITAPNIDLY 240 NMDGAASNFT AEFEHMINTS QQKIDGLEFL YENLVIDKFT STSGGNLDWE SMNPYVLPLP 300 PIVASSDGGF QQGVIFQQGA LDELRYPMVQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00089 | SELEX | Transfer from AT3G49690 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571495.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 4e-79 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A1U8GK14 | 0.0 | A0A1U8GK14_CAPAN; Transcription factor RAX3 | ||||
TrEMBL | A0A2G2ZR55 | 0.0 | A0A2G2ZR55_CAPAN; transcription factor RAX3-like | ||||
TrEMBL | A0A2G3CPG6 | 0.0 | A0A2G3CPG6_CAPCH; Transcription factor RAX3 | ||||
STRING | PGSC0003DMT400012702 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 1e-78 | myb domain protein 84 |
Publications ? help Back to Top | |||
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