PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g15740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GeBP | ||||||||
Protein Properties | Length: 387aa MW: 43506.6 Da PI: 10.1944 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 115.8 | 2.5e-36 | 164 | 259 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrlwse+De+++L+G+ d+++k++++p++d+ af+e +kks++++vsk ql +KirrLKkK+ ++ k ++gke +++k+h+qk++elskkiWg+ CA04g15740 164 LFQRLWSEDDEVAILKGMSDYRSKKKADPVADLGAFHESIKKSLHVDVSKAQLQDKIRRLKKKYMNNAGK-EKGKERVLTKAHEQKVYELSKKIWGK 259 79********************************************************************.9***********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.7E-33 | 165 | 258 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MKKKNPAKRW KFLRRXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAK KPPPPQDSSS 60 SEEEESESES EPDPDPVTQK PNLLVKPIAS KPMDVPKKSS PKPRSKSDAS AKLVSPKKSS 120 STVGAKRAAG EGEAKESKKS KKKQEKEVET PVKKPVNEDV KRQLFQRLWS EDDEVAILKG 180 MSDYRSKKKA DPVADLGAFH ESIKKSLHVD VSKAQLQDKI RRLKKKYMNN AGKEKGKERV 240 LTKAHEQKVY ELSKKIWGKE KSDKGDQVEV VKVDNVAASK GRQDGGVKDN GVLFEVKEEK 300 PSAEVEKDVE VKRNLNLIPC VENVAGLEKW LEENSGVLSV EKRNAMKEKW EALKAAEADL 360 CLRRVKLIAE QMELVLEAVR DSGTET* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016570841.1 | 0.0 | PREDICTED: uncharacterized protein LOC107868687 | ||||
TrEMBL | A0A2G2ZQK5 | 0.0 | A0A2G2ZQK5_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079215 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-26 | DNA-binding storekeeper protein-related transcriptional regulator |