PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g15250
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 360aa    MW: 39974.5 Da    PI: 8.3329
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g15250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.5e-16210246135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  CA04g15250 210 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 246
                 **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.0E-572107IPR010399Tify domain
PROSITE profilePS5132011.65772107IPR010399Tify domain
PfamPF062005.8E-976106IPR010399Tify domain
PROSITE profilePS5101712.689137179IPR010402CCT domain
PfamPF062031.0E-14137178IPR010402CCT domain
SuperFamilySSF577163.42E-11203258No hitNo description
SMARTSM004013.7E-12204257IPR000679Zinc finger, GATA-type
CDDcd002024.42E-15209252No hitNo description
Gene3DG3DSA:3.30.50.102.5E-13209251IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.7E-14210246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MIPENPRPLQ ARPYEDHMHA PLQSEDDDED GGAYEDDGDE ETMDEAEDVS MKVLNQRQYG  60
GRGGGGGGGV VQVCRSSELT LAFEGEVYVF PAVTPDKVQA VLLLLGGCDI PTAVPTVELP  120
FDKKVEDLPK QANPSRRFAS LVRFREKRKE RCFDKKIRYS VRKEVAQRMH RKNGQFASLK  180
SSSGSSSCDS AKSSLEGDGT QQSGTVLGKC HHCGVSENCT PAMRRGPDGP RTLCNACGLK  240
WANKGTLRDL SKAARKISVE PNELVCFISR NEKYVSGLKN LTLYALYYLV IRLYTFYFYF  300
TKKDLLKIFN LLIHLSVRDN EKIKVLHCPP GKTSMDVTHP FLKVETSSIA RMNIYGSTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-80HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569005.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL74e-62GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1U8GD490.0A0A1U8GD49_CAPAN; GATA transcription factor 28
TrEMBLA0A2G2ZQM30.0A0A2G2ZQM3_CAPAN; GATA transcription factor 19-like
STRINGXP_009759907.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-58ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]