PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g15180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9312.13 Da    PI: 10.8644
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g15180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-271059150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk nr vt+skRr+g++KKA+ELSvLCd+++++++fs+tg+l  +s
  CA04g15180 10 KRIENKANRGVTYSKRRKGLIKKAYELSVLCDTDISLLMFSPTGRLTSFS 59
                79*********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.23E-27162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.637262IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-35261IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-25424IPR002100Transcription factor, MADS-box
PROSITE patternPS003500458IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241158IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-252439IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-253960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MMGRAKIEIK RIENKANRGV TYSKRRKGLI KKAYELSVLC DTDISLLMFS PTGRLTSFSP  60
KQRCYVPSLI ISFFFFVIIS T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16259158MEF2C
5f28_B2e-16259158MEF2C
5f28_C2e-16259158MEF2C
5f28_D2e-16259158MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-56HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571553.18e-38PREDICTED: agamous-like MADS-box protein AGL66
SwissprotQ1PFC27e-26AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A2G2ZQA02e-51A0A2G2ZQA0_CAPAN; Uncharacterized protein
STRINGPP1S163_70V6.13e-26(Physcomitrella patens)
STRINGPOPTR_0002s09290.17e-26(Populus trichocarpa)
STRINGOPUNC06G07570.11e-25(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.17e-28AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]