PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g14880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17642.8 Da PI: 5.9899 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.4e-17 | 23 | 66 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y+GVr+++ +gr++AeIr p++ ++r++lg+++taeeAa a++ CA04g14880 23 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTYDTAEEAAFAYDI 66 69********.**********933...5******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.79E-28 | 23 | 81 | No hit | No description |
Pfam | PF00847 | 5.1E-11 | 23 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-18 | 24 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-26 | 24 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.442 | 24 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-28 | 24 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-9 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-9 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MENITNIPQL HVRNLGRSSR HSTKYHGVRR RPWGRYAAEI RNPNTKQRHW LGTYDTAEEA 60 AFAYDISSIA FCGIENARTN FVYPFPSFPS LYNSPAPPSP PPLSPPPPPP STPELEVFEN 120 NCMEIEMTDN AGDDESLLIA SILQSFCHTN TLDKLAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 24 | 73 | 14 | 64 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914525 | 1e-166 | CU914525.3 S.lycopersicum DNA sequence from clone LE_HBa-149O17 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 1e-166 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016570881.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q9FYK5 | 1e-24 | ESR2_ARATH; Ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | A0A1U8GHV9 | 1e-113 | A0A1U8GHV9_CAPAN; Ethylene-responsive transcription factor | ||||
TrEMBL | A0A2G2ZQ94 | 1e-113 | A0A2G2ZQ94_CAPAN; ethylene-responsive transcription factor LEP-like | ||||
STRING | PGSC0003DMT400056527 | 8e-78 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-26 | DORNROSCHEN-like |