PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g14740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 514aa    MW: 58315.7 Da    PI: 4.5454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g14740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.9e-52341602128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 ppGfrFhPtdeelv +yLk+k+ ++++ l ++i+e+d+yk+eP+dLp  +k+k+++++w+fFs+rd+ky++g r+nratk+gyWkatgkd+ +++ +++
  CA04g14740  34 PPGFRFHPTDEELVLYYLKRKICRRRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRATKHGYWKATGKDRIITC-NSR 130
                 9*************************999.99**************96559999*****************************************.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kktLvfykgrap ge+tdWvmhey++
  CA04g14740 131 AVGVKKTLVFYKGRAPVGERTDWVMHEYTM 160
                 ****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-6021183IPR003441NAC domain
PROSITE profilePS5100555.60633183IPR003441NAC domain
PfamPF023651.0E-2734159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MKLLLNSSTP SSSSSPPSKE MKTSQYFGEN SVFPPGFRFH PTDEELVLYY LKRKICRRRI  60
LLDAIAETDV YKWEPEDLPD LSKLKTGDRQ WFFFSPRDRK YPNGARSNRA TKHGYWKATG  120
KDRIITCNSR AVGVKKTLVF YKGRAPVGER TDWVMHEYTM DEEELKRCLT AQDYYALYKV  180
FKKSGPGPKN GEQYGAPFRE EDWVDDECLN AKVSVQLESP RRQENSTTHI DVVPATDDVL  240
EELLNCIADE PVLPGPVDNN FALGQLVQEE DTESTLLNQS SREVNLYNHC AATGPSFQQY  300
NARASFDLTQ SGTSQLHLHE APEVSSAPVN HEKPVYVAEE DYLEDFLEMD DLLVPEPSVQ  360
NFDDPGFCIQ NFDHQMPNGQ VFDKPAGNME TLQFNDFDGL TEFDLYHDAP LFLDNAGTPT  420
VGQIAQPYVN NSVNGISYPD SATYMSTSQN GMMDYQQMHL NHENQISNQF WTLDERFDVF  480
NPVEGNKSVV HQASSGIQRI PYSNAASFSW LMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-473318317165NO APICAL MERISTEM PROTEIN
1ut4_B2e-473318317165NO APICAL MERISTEM PROTEIN
1ut7_A2e-473318317165NO APICAL MERISTEM PROTEIN
1ut7_B2e-473318317165NO APICAL MERISTEM PROTEIN
3swm_A2e-473318320168NAC domain-containing protein 19
3swm_B2e-473318320168NAC domain-containing protein 19
3swm_C2e-473318320168NAC domain-containing protein 19
3swm_D2e-473318320168NAC domain-containing protein 19
3swp_A2e-473318320168NAC domain-containing protein 19
3swp_B2e-473318320168NAC domain-containing protein 19
3swp_C2e-473318320168NAC domain-containing protein 19
3swp_D2e-473318320168NAC domain-containing protein 19
4dul_A2e-473318317165NAC domain-containing protein 19
4dul_B2e-473318317165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4375230.0KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556572.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
TrEMBLA0A1U8FBG60.0A0A1U8FBG6_CAPAN; NAC domain-containing protein 78
TrEMBLA0A2G2ZQ480.0A0A2G2ZQ48_CAPAN; NAC domain-containing protein 17-like isoform X1
STRINGSolyc04g072220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-105NAC domain containing protein 17