PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g14740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 514aa MW: 58315.7 Da PI: 4.5454 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.4 | 4.9e-52 | 34 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ppGfrFhPtdeelv +yLk+k+ ++++ l ++i+e+d+yk+eP+dLp +k+k+++++w+fFs+rd+ky++g r+nratk+gyWkatgkd+ +++ +++ CA04g14740 34 PPGFRFHPTDEELVLYYLKRKICRRRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRATKHGYWKATGKDRIITC-NSR 130 9*************************999.99**************96559999*****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLvfykgrap ge+tdWvmhey++ CA04g14740 131 AVGVKKTLVFYKGRAPVGERTDWVMHEYTM 160 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-60 | 21 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.606 | 33 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 34 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MKLLLNSSTP SSSSSPPSKE MKTSQYFGEN SVFPPGFRFH PTDEELVLYY LKRKICRRRI 60 LLDAIAETDV YKWEPEDLPD LSKLKTGDRQ WFFFSPRDRK YPNGARSNRA TKHGYWKATG 120 KDRIITCNSR AVGVKKTLVF YKGRAPVGER TDWVMHEYTM DEEELKRCLT AQDYYALYKV 180 FKKSGPGPKN GEQYGAPFRE EDWVDDECLN AKVSVQLESP RRQENSTTHI DVVPATDDVL 240 EELLNCIADE PVLPGPVDNN FALGQLVQEE DTESTLLNQS SREVNLYNHC AATGPSFQQY 300 NARASFDLTQ SGTSQLHLHE APEVSSAPVN HEKPVYVAEE DYLEDFLEMD DLLVPEPSVQ 360 NFDDPGFCIQ NFDHQMPNGQ VFDKPAGNME TLQFNDFDGL TEFDLYHDAP LFLDNAGTPT 420 VGQIAQPYVN NSVNGISYPD SATYMSTSQN GMMDYQQMHL NHENQISNQF WTLDERFDVF 480 NPVEGNKSVV HQASSGIQRI PYSNAASFSW LMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 33 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 33 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 33 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 33 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 33 | 183 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-47 | 33 | 183 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 33 | 183 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF437523 | 0.0 | KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556572.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like isoform X1 | ||||
TrEMBL | A0A1U8FBG6 | 0.0 | A0A1U8FBG6_CAPAN; NAC domain-containing protein 78 | ||||
TrEMBL | A0A2G2ZQ48 | 0.0 | A0A2G2ZQ48_CAPAN; NAC domain-containing protein 17-like isoform X1 | ||||
STRING | Solyc04g072220.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3212 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-105 | NAC domain containing protein 17 |