PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g12880
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 265aa    MW: 31037.5 Da    PI: 10.5605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g12880genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-192569147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r ++T+eE+e+lv a++ +G++ W++I+r ++ gRt++ +k++w+ +
       CA04g12880 25 RRPFTEEEEERLVAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 69
                     679*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-9830IPR009057Homeodomain-like
SuperFamilySSF466892.01E-22875IPR009057Homeodomain-like
PROSITE profilePS5129428.3992074IPR017930Myb domain
SMARTSM007172.9E-162472IPR001005SANT/Myb domain
PfamPF002496.6E-162569IPR001005SANT/Myb domain
CDDcd001674.49E-122770No hitNo description
Gene3DG3DSA:1.10.10.601.3E-173170IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQRSCSRRKS CRLRWFNQLD PRINRRPFTE EEEERLVAAH RIHGNKWALI SRLFPGRTDN  60
AVKNHWHVLM ARKQREQSKI CGKRSLYQQQ HDNFLSDSKS PSYGFRRRNI NNNNNMTKTH  120
EGNYGSKINF FEFQNPNKDR VFSMSSTYSS NSHDFCRRNG SHLVRESSID QKSLRQNNLS  180
FLSHGGGANY SYRRSTIIRN PFSYADRNES NGITERVVNI TDGTFSLEKM LRESIEQQQQ  240
QYGEEARERK DIPFIDFLGV GISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1897343107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571627.11e-168PREDICTED: myb-related protein A-like isoform X1
TrEMBLA0A2G2ZPL70.0A0A2G2ZPL7_CAPAN; Uncharacterized protein
STRINGSolyc04g064540.2.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-36myb domain protein 52