PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g12860

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 564aa MW: 62907.8 Da PI: 4.8145

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g12860	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	443.1	2e-135	195	563	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + L++cA a+++g+ e+a++++++l++++s +gdp++R aay++eALaar+a s+ +lykal+++e++ sse+l+a+++++ev+P+++f++++aN a CA04g12860 195 QMLFSCAAAIQDGNIEQASSVINELRQMVSIQGDPLERTAAYMVEALAARMATSGRGLYKALKCKEAT---SSERLSAMQVLFEVCPYFRFGFMAANGA 290 79***************************************************************9...9*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +lea++ e+rvHiiDfdi+qG Q+ ++lq+L s p++pp+lR+Tgv++pes +l+ +g rLa++A+ l++pfef++ v ++++ +++ +L+++p CA04g12860 291 LLEAFKDEKRVHIIDFDINQGSQYYTFLQTLGSMPGKPPHLRLTGVDDPESIqrAVGSLNVIGLRLAELAKDLKIPFEFQA-VPSNTALVTPTMLKCRP 388 **********************************************99778899*******************.79*********** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 gEa+ Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+rf+e +yysa+f+sl+a+l+r+s+er++vEr++l+r+i n+ CA04g12860 389 GEAVLVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTAPFLQRFAEVYSYYSAVFESLDATLSRDSQERVNVERQCLARDIINI 487 *********************************************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vaceg er+er e ++kWr+r+++aGF+p p+s ++++++k+l+++++++ y+ +ee g+l++gW+d++++++SaW+ CA04g12860 488 VACEGLERIERYEVAGKWRARMMMAGFTPCPISRNVYDSIKTLIKQYSER-YTAKEEAGALYFGWEDKNMTVASAWK 563 ********************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.624	167	544	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-133	195	563	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MSLVRSVRSI GNGKLYFPNG HNDNSSLSTS IYTKNARGIM YATESSSTDS YDPKYLLDSP 60 SPSEELLNIS PTDALGNPFH QRHSSSFQPS RDYNQGSCDS GDFVNQSPDS SEYNDGRVTM 120 KLQELERVLF DDNEIEGDDV CAHGETMDID DEWFSQIRTV LLQDSPKEST SADSNISSSS 180 SYKEISVTAP QTPKQMLFSC AAAIQDGNIE QASSVINELR QMVSIQGDPL ERTAAYMVEA 240 LAARMATSGR GLYKALKCKE ATSSERLSAM QVLFEVCPYF RFGFMAANGA LLEAFKDEKR 300 VHIIDFDINQ GSQYYTFLQT LGSMPGKPPH LRLTGVDDPE SIQRAVGSLN VIGLRLAELA 360 KDLKIPFEFQ AVPSNTALVT PTMLKCRPGE AVLVNFAFQL HHMPDESVST VNQRDQLLRM 420 VKSLNPKLVT VVEQDMNTNT APFLQRFAEV YSYYSAVFES LDATLSRDSQ ERVNVERQCL 480 ARDIINIVAC EGLERIERYE VAGKWRARMM MAGFTPCPIS RNVYDSIKTL IKQYSERYTA 540 KEEAGALYFG WEDKNMTVAS AWK*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MSLVRSVRSI GNGKLYFPNG HNDNSSLSTS IYTKNARGIM YATESSSTDS YDPKYLLDSP  60
SPSEELLNIS PTDALGNPFH QRHSSSFQPS RDYNQGSCDS GDFVNQSPDS SEYNDGRVTM  120
KLQELERVLF DDNEIEGDDV CAHGETMDID DEWFSQIRTV LLQDSPKEST SADSNISSSS  180
SYKEISVTAP QTPKQMLFSC AAAIQDGNIE QASSVINELR QMVSIQGDPL ERTAAYMVEA  240
LAARMATSGR GLYKALKCKE ATSSERLSAM QVLFEVCPYF RFGFMAANGA LLEAFKDEKR  300
VHIIDFDINQ GSQYYTFLQT LGSMPGKPPH LRLTGVDDPE SIQRAVGSLN VIGLRLAELA  360
KDLKIPFEFQ AVPSNTALVT PTMLKCRPGE AVLVNFAFQL HHMPDESVST VNQRDQLLRM  420
VKSLNPKLVT VVEQDMNTNT APFLQRFAEV YSYYSAVFES LDATLSRDSQ ERVNVERQCL  480
ARDIINIVAC EGLERIERYE VAGKWRARMM MAGFTPCPIS RNVYDSIKTL IKQYSERYTA  540
KEEAGALYFG WEDKNMTVAS AWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-64	200	562	26	378	Protein SCARECROW
5b3h_A	4e-64	200	562	25	377	Protein SCARECROW
5b3h_D	4e-64	200	562	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016569607.1	0.0	PREDICTED: scarecrow-like protein 1
Refseq	XP_016569608.1	0.0	PREDICTED: scarecrow-like protein 1
Refseq	XP_016569609.1	0.0	PREDICTED: scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A2G2WYI4	0.0	A0A2G2WYI4_CAPBA; Uncharacterized protein
TrEMBL	A0A2G2ZPK2	0.0	A0A2G2ZPK2_CAPAN; Scarecrow-like protein 1
STRING	Solyc04g064550.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8967	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]