PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g11690

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 191aa MW: 22185.8 Da PI: 10.3196

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g11690	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.9	8.7e-12	37	82	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT++E+ ++++ k++G+g+W+ Ia+ + +R q+ s+ qk+ CA04g11690 37 NPWTEDEQIAFLKGLKLHGKGNWANIAKDFLPNRISTQIASHSQKH 82 58*************************999********9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.505	31	87	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-11	33	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-8	34	85	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.34E-10	34	85	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-8	35	85	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-10	37	82	IPR001005	SANT/Myb domain
CDD	cd00167	1.06E-8	38	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MCSEKGKNIK LFGLEITTTI TTVMFRKDYR RKIKKANPWT EDEQIAFLKG LKLHGKGNWA 60 NIAKDFLPNR ISTQIASHSQ KHFMRLDVNS NERKQHKKSS IFDIHLEKIE DIEHAIVPLE 120 INQESLYVPI FLPNFNLTER IQAPKVTPVT WVYMYPYHQY TSTSASATLL LHSISRSLGF 180 LLLRLRMIWS *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016570982.1	1e-138	PREDICTED: transcription factor MYB1R1-like
TrEMBL	A0A2G2ZNR9	1e-139	A0A2G2ZNR9_CAPAN; Uncharacterized protein
STRING	Solyc11g050730.1.1	1e-66	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7454	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	1e-19	MYB_related family protein