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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
CA04g11230 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family |
GRAS |
Protein Properties |
Length: 475aa MW: 54426.3 Da PI: 6.7004 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
CA04g11230 | genome | PEP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 291.7 | 2e-89 | 87 | 470 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99
l++ Ll A+ +++++ la L +l +++s +gd++qR+aayf+ +L arl+ s y+ + +t+ +ee+ a++ f++vsP+++f+h+taN
CA04g11230 87 LIHSLLISATSINENSIDLAVDNLRELYQNVSLKGDSVQRVAAYFADGLIARLLTRKSPFYDMIMKPPTQ----EEEFLAFTEFYKVSPFYQFAHFTAN 181
57899999***********************************************999999988766665....68889999***************** PP
GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledle 190
qaIle++e+e +H+iDfdis+G+QWp+L+q+L++ + ++ slRiTg g+ +el+et+ rL +fA+ + +++fef+ + l+ +
CA04g11230 182 QAILESFEKEleynnGLLHVIDFDISYGFQWPSLIQSLSENAttSNRISLRITGYGK----TIDELRETETRLVSFAKCFrNLSFEFQGV----LSRYK 272
*********998887889*********************988656677*********....99***************9758*******7....88999 PP
GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
l++L +++E+laVnl+++l +l + s+++e+Lk v +l P +v++veqe ++F+ rf+e+l+y++a+fdsl+ lp +s +r ++E+
CA04g11230 273 LSNLTKRKNETLAVNLIFHLNSLS-----TYSKISETLKEVHDLCPSIVTIVEQEGCKIPQTFMPRFMESLHYFAAMFDSLDDCLPIDSIKRLSIEKNH 366
9*****************999997.....4444669*******************9999**************************************** PP
GRAS 290 lgreivnvvacegae.......rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.............eesgslvlgWkdrpL 367
lg+ei+n++ ++e + r e++e+W+ r+e+ GF +pls k+ +qaklll+ + ++ +++ e+ ++ l W+dr++
CA04g11230 367 LGKEIKNMLNYDHKEgannnvySSSRYEQMETWKGRMESHGFLGIPLSCKNIMQAKLLLKIRShFN-STIQldggnggfrvleiEDPRAISLAWQDRSI 464
*********7655442223333678**********************************9877444.555544554444444555566677******** PP
GRAS 368 vsvSaW 373
v++SaW
CA04g11230 465 VTASAW 470
****** PP
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Sequence ? help Back to Top |
Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MGDIVDHEEE FLSLRLAILN NSSCCDQRNI NKIKKRKRRE LEFINTWDLN ESCEGKIFSL 60 LELRESMLKI DVKKKGGVVE DGKGLHLIHS LLISATSINE NSIDLAVDNL RELYQNVSLK 120 GDSVQRVAAY FADGLIARLL TRKSPFYDMI MKPPTQEEEF LAFTEFYKVS PFYQFAHFTA 180 NQAILESFEK ELEYNNGLLH VIDFDISYGF QWPSLIQSLS ENATTSNRIS LRITGYGKTI 240 DELRETETRL VSFAKCFRNL SFEFQGVLSR YKLSNLTKRK NETLAVNLIF HLNSLSTYSK 300 ISETLKEVHD LCPSIVTIVE QEGCKIPQTF MPRFMESLHY FAAMFDSLDD CLPIDSIKRL 360 SIEKNHLGKE IKNMLNYDHK EGANNNVYSS SRYEQMETWK GRMESHGFLG IPLSCKNIMQ 420 AKLLLKIRSH FNSTIQLDGG NGGFRVLEIE DPRAISLAWQ DRSIVTASAW HCVL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC171734 | 0.0 | AC171734.2 Solanum lycopersicum chromosome 11 clone C11HBa0064J13, complete sequence. |