PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g08580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37570.4 Da PI: 7.1023 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl CA04g08580 14 RGPWTAEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T E+e +++++k G++ W++Ia++++ gRt++++k++w++ CA04g08580 68 DNFTSLEEECILELHKTIGSR-WSLIAKRLP-GRTDNDVKNYWNT 110 589******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.02 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.772 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.43E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA SHGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TSLEEECILE LHKTIGSRWS LIAKRLPGRT DNDVKNYWNT KLKKKLVNMG 120 IDPVTHKPFA QVFAEYGKIS GLPIQNAKNH IHLPNNTTGK NHVCMESKQF PFSNGTPHDK 180 FVHKIMNDQL QENYTKNYTW DSKETLQTHS SLLISTSTSC NPTVHSYSPS FSSVQSQVHT 240 MPSSTSTCNW NEFIFGDPFT SSGAEQKQET FLSNLLQKEN PTCGEVTEVE EKQPVEEATC 300 SSAMDSFVDT ILANEKQMLM DFPPLLDVYL DY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246962 | 3e-68 | AC246962.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence. | |||
GenBank | AC247025 | 3e-68 | AC247025.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence. | |||
GenBank | HG975515 | 3e-68 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571671.1 | 0.0 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | A0A1U8GK76 | 0.0 | A0A1U8GK76_CAPAN; Myb-related protein | ||||
TrEMBL | A0A2G2ZNR5 | 0.0 | A0A2G2ZNR5_CAPAN; transcription factor MYB35 | ||||
STRING | XP_009764550.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-77 | MYB family protein |