PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g01790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21229.6 Da PI: 7.7365 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + +++lg+f+t eAa a++aa+ k++g CA04g01790 17 HYRGVRKRP-WGKYAAEIRDP-----HrkCQVWLGTFDTTVEAAMAYDAAAIKFRG 66 6********.**********6.....336************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.8E-34 | 17 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 17 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-30 | 17 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.234 | 17 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.54E-20 | 17 | 75 | No hit | No description |
Pfam | PF00847 | 3.0E-12 | 17 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 56 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MXRTAAATAT PVEKEVHYRG VRKRPWGKYA AEIRDPHRKC QVWLGTFDTT VEAAMAYDAA 60 AIKFRGIKAK TNFPIPVDLT RSHSEVSTVE SSTAKTKVKK VEVPEELVIV ESSHPLLDLT 120 LGRSSYCLGS KLFSSQTQNH LDAHGRDHGG LDRGEMFHTN RFGSIIMGSD AGNLSESDSS 180 SVVDFMGNDT KDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 14 | 78 | 2 | 67 | ATERF1 |
3gcc_A | 2e-22 | 14 | 78 | 2 | 67 | ATERF1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571759.1 | 1e-69 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2G2ZLK1 | 1e-141 | A0A2G2ZLK1_CAPAN; Ethylene-responsive transcription factor 12 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-32 | erf domain protein 9 |