PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g37140
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 551aa    MW: 60857.9 Da    PI: 5.0655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g37140genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4401.7e-1341755451374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAea+++++++la+alL+++  la +++ +m+++a yf+ AL+++++r    ly   pps+ ++   ++ l +   f+e++P+lkf+h+taN
  CA03g37140 175 LVHTLMACAEAIQQEEMKLADALLKQIAFLAVSQAGAMRKVAMYFAYALERKIYR----LY---PPSNPNDFAFTDLLEM--HFYETCPYLKFAHFTAN 264
                 689****************************************************....66...4444443334555444..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qaIlea++++++vH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p+++    ++e l+e+g+rL ++Ae+++v+fef+ +va++++dl+ + +
  CA03g37140 265 QAILEAFANKTKVHVIDFSMKQGMQWPALLQALALRPSGPPSFRLTGIGPPSHDnnsnNAEHLQEVGWRLGQLAESIKVEFEFRGFVANSMADLNASIF 363
                 ***************************************************999999999*************************************** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpreseerikvEre 288
                 ++++gE++aVn++++lh+ll++++ +e+     L++vk+l+P++++vveqea+hn++ F +rf+e+l+yys+lfdsle +     l++ s++++ ++++
  CA03g37140 364 DIREGETVAVNSIFELHQLLARPGGIEK----GLSVVKDLKPDIFTVVEQEANHNGPVFIDRFTESLHYYSTLFDSLEGGsvggeLGPVSDQDKLMSEV 458
                 ***************************9....*********************************************8776777788889********* PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +lgr+i+n+v+ceg +r+erhetl++Wr+r+++aGF+pv+l+++a kqa++ll+ ++ + gyrvee++g+l+lgW++rpL+++SaW+
  CA03g37140 459 YLGRQICNLVSCEGVDRVERHETLAQWRRRFNTAGFEPVHLGSNAFKQASMLLALFAgGCGYRVEENNGCLMLGWHTRPLIATSAWK 545
                 *********************************************************99***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.9E-352699No hitNo description
PfamPF120418.9E-352693IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.267149524IPR005202Transcription factor GRAS
PfamPF035145.8E-132175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MPCDQRTFSG KGKMMKEEEQ DGGGVDELLA VLGYKVKESD MAEVAQKLEQ LERVMGNVQQ  60
DNLTFLASDT VHYNPSDLST WIQSMISELN PQHPFTPNNH PSSLTPPPPQ VYDDDSSFDS  120
DLTAIPGKAV FPQIDGPLLN PQSKRFKPST TEVSSSSSSS SSICIWGGGD NGVRLVHTLM  180
ACAEAIQQEE MKLADALLKQ IAFLAVSQAG AMRKVAMYFA YALERKIYRL YPPSNPNDFA  240
FTDLLEMHFY ETCPYLKFAH FTANQAILEA FANKTKVHVI DFSMKQGMQW PALLQALALR  300
PSGPPSFRLT GIGPPSHDNN SNNAEHLQEV GWRLGQLAES IKVEFEFRGF VANSMADLNA  360
SIFDIREGET VAVNSIFELH QLLARPGGIE KGLSVVKDLK PDIFTVVEQE ANHNGPVFID  420
RFTESLHYYS TLFDSLEGGS VGGELGPVSD QDKLMSEVYL GRQICNLVSC EGVDRVERHE  480
TLAQWRRRFN TAGFEPVHLG SNAFKQASML LALFAGGCGY RVEENNGCLM LGWHTRPLIA  540
TSAWKLNSVC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6118254426378Protein SCARECROW
5b3h_A6e-6118254425377Protein SCARECROW
5b3h_D6e-6118254425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3691180.0KT369118.1 Capsicum annuum putative DELLA protein GAI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311745.10.0DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G3A3V00.0A0A2G3A3V0_CAPAN; DELLA protein RGA2
STRINGXP_009789076.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein