PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g36090

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 407aa MW: 45044.5 Da PI: 6.1755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g36090	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.4e-08	318	358	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L CA03g36090 318 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 358 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.332	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-14	314	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-12	317	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	318	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-4	331	363	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MENLDWNETP DNFGASFDPI HVISNWNMPQ RQEAAMRLAA DSMAAKSGAD PTRNCTEMGF 60 SSSPMLLNIP NYITDNNNNN NPMCLMDDFG VQVVKPGTGL LSNTVSLESI DCLLSATTTN 120 NTDTSVEDDG MSVIFGDSNS LWNSGECSDI NATKLSPGYE QLLTCLPTTT DNKIVVEEEN 180 KRKRKHNELD EVVSKSSLGN SPNEFNLFQS NSLTGGGCRN NFRLISGKQS KCKKPRTTES 240 NITNNNNKRP TSSNINFQQA TSSASSIDQE PDPEAIAQMK EMIYRAAAFR PVDFGTEVLE 300 KPKRKNVRIS TDPQTVAARQ RRERISERIR VLQRLVPGGS KMDTASMLDE AANYLKFLRS 360 QVKALEAIGQ KQDPFASLVP FNYPIPMQLP HYPLLQNPNP THRPKS*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MENLDWNETP DNFGASFDPI HVISNWNMPQ RQEAAMRLAA DSMAAKSGAD PTRNCTEMGF  60
SSSPMLLNIP NYITDNNNNN NPMCLMDDFG VQVVKPGTGL LSNTVSLESI DCLLSATTTN  120
NTDTSVEDDG MSVIFGDSNS LWNSGECSDI NATKLSPGYE QLLTCLPTTT DNKIVVEEEN  180
KRKRKHNELD EVVSKSSLGN SPNEFNLFQS NSLTGGGCRN NFRLISGKQS KCKKPRTTES  240
NITNNNNKRP TSSNINFQQA TSSASSIDQE PDPEAIAQMK EMIYRAAAFR PVDFGTEVLE  300
KPKRKNVRIS TDPQTVAARQ RRERISERIR VLQRLVPGGS KMDTASMLDE AANYLKFLRS  360
QVKALEAIGQ KQDPFASLVP FNYPIPMQLP HYPLLQNPNP THRPKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	318	323	RQRRER

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238447	1e-161	AC238447.1 Solanum lycopersicum chromosome 3 clone C03HBa0079K08, complete sequence.
GenBank	AC238465	1e-161	AC238465.1 Solanum lycopersicum chromosome 3 clone C03HBa0241F16, complete sequence.
GenBank	EU124730	1e-161	EU124730.2 Solanum lycopersicum chromosome 3 clone C03HBa0001E24, complete sequence.
GenBank	HG975442	1e-161	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	1e-161	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567474.1	0.0	PREDICTED: transcription factor bHLH87 isoform X1
Swissprot	Q8S3D2	7e-77	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2G3A3Y3	0.0	A0A2G3A3Y3_CAPAN; Transcription factor HEC2
STRING	PGSC0003DMT400006453	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]