PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g35440
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 606aa    MW: 67537.8 Da    PI: 5.646
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g35440genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09488536348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT +E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
       CA03g35440 488 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascSYRTSVDLKDKWRNLL 536
                      8****************************9***99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.845481540IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-13482539IPR009057Homeodomain-like
SMARTSM007172.1E-8485538IPR001005SANT/Myb domain
CDDcd116603.49E-19487537No hitNo description
SuperFamilySSF466893.74E-16487543IPR009057Homeodomain-like
PfamPF002494.1E-7488536IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDAIEAKTEV SVVPVTNTFG ALEKEITDPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED  60
DKCEPKLVPD TRQISESCIT EGYLMARNLF QVPEEKSNVL VDAVPDLGNI DAPEKVAVHG  120
LNPFSELSDF DQSVRTETCF HSQDASNEDM PSTSAAGSSW KPDFSKLEGK ICLDNLTVKE  180
LQETFKATFG RETSVKDKQW LKRRITMGLT NSCDFSCTTF IIRDNVVVKN GEEQIYHRVK  240
SRISADSEDG VANSDSRGSL GDRDNRINDD ADLCGEDVST SAFESCNVTK DLDTEQRTAK  300
RARKPTKRYI EELSELESRE SSEKLASPDK ISRYRFACPQ THMRPTKNVR SNARPLVTRE  360
DSLGGSGIQI PFVSRIRRSR PRENFMPLLK LQPCGMDMVT RKVTSAFDVS GPQEDKRNND  420
LIKSSSSPGW TQQPLIAACE KDDHYSGMKI VELDNDVEPN DCSEYNSDDN VVTVPTQKGG  480
MRRKHHRPWT IDEVVKLVEG VARYGAGRWS EIKRLAFASC SYRTSVDLKD KWRNLLKASF  540
VQLPAEKGIL NSRKQASVPI PAAILRRVRE LADMQGQFPP GLSTGKSSGH SSSDRSVHDA  600
RSGFL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562495.10.0PREDICTED: uncharacterized protein LOC107861694
TrEMBLA0A1U8FUG20.0A0A1U8FUG2_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZVU30.0A0A2G2ZVU3_CAPAN; uncharacterized protein LOC107861694
STRINGPGSC0003DMT4000063420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-96TRF-like 6