PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g35060
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92059.4 Da    PI: 6.4662
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g35060genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-191573357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CA03g35060 15 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                5679*****************************************************97 PP
2START170.51.1e-531603673205
                 HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
       START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                 aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++++v+ ++  g+++l +++l+
  CA03g35060 160 AEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWFRDCRTVDVINVLPTAngGTIELLYMQLY 257
                 7899*****************************************************.9999999999****************9999*********** PP

                 TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHH CS
       START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegak 194
                 a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l+++ ++++lr+l++s+++ ++k
  CA03g35060 258 APTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVPNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWCVPEVLRPLYESSAVLAQK 356
                 *************************************9999999******************************************************* PP

                 HHHHHTXXXXX CS
       START 195 twvatlqrqce 205
                 t+va+l+++++
  CA03g35060 357 TTVAALRYLRQ 367
                 ******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5161074IPR001356Homeobox domain
SMARTSM003895.2E-161278IPR001356Homeobox domain
SuperFamilySSF466899.41E-171477IPR009057Homeodomain-like
CDDcd000867.98E-171575No hitNo description
PfamPF000462.2E-161673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-181773IPR009057Homeodomain-like
CDDcd146861.77E-667106No hitNo description
PROSITE profilePS5084825.314149377IPR002913START domain
CDDcd088754.59E-75153369No hitNo description
SMARTSM002341.4E-41158368IPR002913START domain
SuperFamilySSF559619.48E-38159370No hitNo description
Gene3DG3DSA:3.30.530.201.3E-22159363IPR023393START-like domain
PfamPF018521.3E-51160367IPR002913START domain
PfamPF086701.1E-49694837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MASCKDGKSV MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRRQTH  120
STPLATKDTS CESVVTSGQH HLTSQHPPRD ASPAGLLSTA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGC TGVAARACGL VGLEPTRVSE ILKDRPSWFR DCRTVDVINV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTTVMDDG SLVVCERSLG NTQNGPSMPP  300
VPNFVRAEIL PSGYLIRPCE GGGSIIHIVD HMNLEAWCVP EVLRPLYESS AVLAQKTTVA  360
ALRYLRQIAQ EVSQTNVTNW GRRPAALRAL GQRLSRGFNE ALNGLADEGW SMLDSDGMDD  420
VAILVNSSPD KLMGLNLSFA NGFSSMSNAV MCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNIDAYAAAA IKVGPCSLPG ARVGNFGGQV ILPLAHTVEH EEASLLLEVI KLEGHSPEDA  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDAP LLPSGFRIIS LESGKEASSP  600
NRTLDLTSAL ETGPAENKVA NDLHTVGGTS RSVMTIAFQF AFESHMQESV ASMARQYVRS  660
IISSVQRVAL ALSPSHLGSH GGLRSPLGTP EAHTLARWIC QSYRCFLGVE LLKANTDQGS  720
ESILKGLWHH SDAIICCSAK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGKKNL  780
CTEFPQIMQQ GFACLQGGIC LSSMSRPISY ERAVAWKVMN EEDTAHCICF MFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562656.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2G3A3Q20.0A0A2G3A3Q2_CAPAN; Homeobox-leucine zipper protein HOX32
STRINGPGSC0003DMT4000067350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]