PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g34980
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 267aa    MW: 29055.2 Da    PI: 6.5151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g34980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.4e-1870118355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+ +++g
  CA03g34980  70 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAVSIKG 118
                 9****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-3068128No hitNo description
SuperFamilySSF541711.7E-2169127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-3169127IPR001471AP2/ERF domain
PROSITE profilePS5103223.14369126IPR001471AP2/ERF domain
PfamPF008478.8E-1269117IPR001471AP2/ERF domain
SMARTSM003805.0E-3669132IPR001471AP2/ERF domain
PRINTSPR003672.2E-107081IPR001471AP2/ERF domain
PRINTSPR003672.2E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKEVEVVQIS EAESCYSSSS SSSSSLSTDS MHKSVFDSSK ALLEEEKKQP RKRTKKQRTA  60
TNSESIHKIY RGVRMRSWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD VAAVSIKGNT  120
AILNFPHLIN FLPRPVSNAP RDVQAAAAKA ASMADLSSSC VPSSSSSSSS SSSSTSSTTT  180
TSSGSEELCE IIELPNLEEN NYDPKTELRL SDSVEGLLYS PWWSTTTTTT DGTDFCGYFL  240
EQYAAAAAGE SFTSCSFETL KWACQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20671301276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567496.11e-143PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G3A3L60.0A0A2G3A3L6_CAPAN; Ethylene-responsive transcription factor TINY
STRINGPGSC0003DMT4000067511e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]