PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g33900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 331aa MW: 37325.5 Da PI: 8.4542 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 141 | 9.6e-44 | 113 | 264 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 a+kkdrhski T+ g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+eWLl+++k ai el++ ss++++ce s + ++s+ ++ CA03g33900 113 AAKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDMLGFDKASKTVEWLLTKSKSAINELVQKinkencngttsisASSPSESCEVISGVINESATTN 211 78**************************************************************99999888877765555566644444444332222 PP TCP 88 g...kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 + k+++k+ ks++++ + +akesr++arararert+ k++++nk+n CA03g33900 212 TtnnVVHKQQKKKVKSTRRTIFHPVVAKESRNQARARARERTKIKNSLNNKNN 264 2443333333345555555555789999*******************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-47 | 114 | 257 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.54 | 115 | 173 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.457 | 239 | 256 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MQPSGNYSPN NSSSSSYFNI DIPSAYMQYE PEFVQYFHDL HFSQPPHDQY NLDTSIMVEE 60 DSNKLDKQEE EDHEELVLKS SKNKKDEMSS TTTSTIRRKN NKCVAGAGAG AGAAKKDRHS 120 KINTAHGPRD RRMRLSLEIA RKFFNLQDML GFDKASKTVE WLLTKSKSAI NELVQKINKE 180 NCNGTTSISA SSPSESCEVI SGVINESATT NTTNNVVHKQ QKKKVKSTRR TIFHPVVAKE 240 SRNQARARAR ERTKIKNSLN NKNNIGESMD DDHQSGIQGY KTNNVMNVVD NFNLVDTGNW 300 SPFIFNYHDI NTEISQEVYD LISLVRNCLC * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567552.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A2G3A3C3 | 0.0 | A0A2G3A3C3_CAPAN; Transcription factor CYCLOIDEA | ||||
STRING | PGSC0003DMT400014572 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-28 | TCP domain protein 12 |