PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g33680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 417aa MW: 46560.5 Da PI: 4.502 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.1 | 1.4e-15 | 99 | 145 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +GVr +k +g+++AeIrdps+ kr++lg+f t e A +a++a r ++ CA03g33680 99 PRGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFETVEAASQAYEAKRAEF 145 79****99.**********964...3*******************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.95 | 98 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-9 | 98 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-14 | 98 | 145 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-7 | 99 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-18 | 100 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-12 | 100 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.96E-18 | 100 | 140 | No hit | No description |
PRINTS | PR00367 | 5.6E-7 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MNVKAVKNVK RERVMEGCIN SVRKVRIIYD DPDATDSESD DDQNENVGRI KRVVKEVVIP 60 CVSCENSFEK CSKIDDVRIQ NSKKIVENKR VQLKPSSLPR GVRMRKWGKY AAEIRDPSQG 120 KRIWLGTFET VEAASQAYEA KRAEFDRTML LEKDKNLSSA GAPAEGSVAC SSHPTNGTNR 180 LESLPSPSSV LDAPTSSAAP VESIDVPAKE MDQMPALETM EDLLFSGCLD FNSGFEDQML 240 NEFVGKAEQG ISRLIEEPLI EQGLKSNCLV EMTEVNIKKQ TKARQQRIEI CKKFTKGIED 300 RSLNCNDKSV LGVLDEPRIM SPSISAELKN VRFEENAATG NDLKLLGFDN NALFDKDPAQ 360 MFDPYTDALG LDSNFLWCYG VDEDFTDDFF EVTSPKLDEV DVRWLDDLLL SDQSTP* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567513.1 | 0.0 | PREDICTED: uncharacterized protein LOC107865832 | ||||
TrEMBL | A0A2G3A3D8 | 0.0 | A0A2G3A3D8_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014358 | 1e-172 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12718 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-19 | ERF family protein |