PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g33530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33723.6 Da PI: 7.2171 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv++++ +G g+W+ a++ g++Rt+k+c++rw++yl CA03g33530 25 RGPWTIEEDNLLVHYITNHGEGRWNMLAKHAGLKRTGKSCRLRWLNYL 72 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.3e-16 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++ +++++ +lG++ W++Ia++++ gRt++++k++w++ CA03g33530 78 RGNLTPQEQLMILELHSKLGNR-WSKIAHYLP-GRTDNEIKNYWRT 121 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.297 | 20 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-31 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-14 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.82E-11 | 27 | 72 | No hit | No description |
SMART | SM00717 | 7.3E-15 | 77 | 125 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.21 | 77 | 127 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.1E-15 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 80 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-11 | 82 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
METDMSFLSK TSSSSSSDDD IELRRGPWTI EEDNLLVHYI TNHGEGRWNM LAKHAGLKRT 60 GKSCRLRWLN YLKPDVKRGN LTPQEQLMIL ELHSKLGNRW SKIAHYLPGR TDNEIKNYWR 120 TRVQKQARNL KIDANSAAFQ EMIRYLWIPR LLQKIQSSSS VMPSIQSPQS TPQGFNIEKN 180 STNTSRCSSC SSSHSSNIYN STNIMSECPK IPPRDIGDSD LNSFVKAHFP VDDNSYDVDN 240 YGQLATGNYY NDVMDYDQMS GDQNKLTGDV LSDSFWSNMD EFFYQKQDMS HCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-28 | 22 | 127 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-28 | 22 | 127 | 24 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-69 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563145.1 | 0.0 | PREDICTED: myb-related protein 340-like | ||||
Swissprot | Q9C9G7 | 1e-76 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A2G3A377 | 0.0 | A0A2G3A377_CAPAN; Transcription factor | ||||
STRING | PGSC0003DMT400014383 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 9e-74 | myb domain protein 62 |
Publications ? help Back to Top | |||
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