PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g32280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 164aa    MW: 18441.5 Da    PI: 5.298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g32280genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-19752251
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                +y+GVr+++ +g+Wv+eIr+ps    ++r++lg++ tae+Aa+a+++a++
  CA03g32280  7 KYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTYETAEDAARAYDEAAR 52
                8*******9.**********944...5*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-34666No hitNo description
PROSITE profilePS5103220.995764IPR001471AP2/ERF domain
PfamPF008476.5E-12751IPR001471AP2/ERF domain
SMARTSM003809.7E-40770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-33765IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-21766IPR016177DNA-binding domain
PRINTSPR003675.4E-11819IPR001471AP2/ERF domain
PRINTSPR003675.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAPPQQKYRG VRQRHWGSWV SEIRHPSLKT RIWLGTYETA EDAARAYDEA ARLVCGPTAR  60
TNFPYNADDS QSFLSSALIA KLQRCQMTSF TTMPKRPGTT KLEDGKKENQ ISPLIRNRGD  120
GDQGQSTESA SQQFNALEDE HIDQMIEELL DYGSIEMSSV LQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-16671470ATERF1
3gcc_A6e-16671470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567535.11e-121PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-57ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2G3CZE91e-119A0A2G3CZE9_CAPCH; Ethylene-responsive transcription factor
STRINGSolyc03g117130.2.16e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-44ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]