PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g32280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 18441.5 Da PI: 5.298 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 7 | 52 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +y+GVr+++ +g+Wv+eIr+ps ++r++lg++ tae+Aa+a+++a++ CA03g32280 7 KYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTYETAEDAARAYDEAAR 52 8*******9.**********944...5*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.41E-34 | 6 | 66 | No hit | No description |
PROSITE profile | PS51032 | 20.995 | 7 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-12 | 7 | 51 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-40 | 7 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-33 | 7 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-21 | 7 | 66 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.4E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAPPQQKYRG VRQRHWGSWV SEIRHPSLKT RIWLGTYETA EDAARAYDEA ARLVCGPTAR 60 TNFPYNADDS QSFLSSALIA KLQRCQMTSF TTMPKRPGTT KLEDGKKENQ ISPLIRNRGD 120 GDQGQSTESA SQQFNALEDE HIDQMIEELL DYGSIEMSSV LQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-16 | 6 | 71 | 4 | 70 | ATERF1 |
3gcc_A | 6e-16 | 6 | 71 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567535.1 | 1e-121 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 4e-57 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A2G3CZE9 | 1e-119 | A0A2G3CZE9_CAPCH; Ethylene-responsive transcription factor | ||||
STRING | Solyc03g117130.2.1 | 6e-89 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-44 | ERF family protein |
Publications ? help Back to Top | |||
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