PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g31380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20610.6 Da PI: 7.6017 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.2 | 4.9e-09 | 7 | 54 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklye 48 ri + ++++v + kR++ + KKA+ L +LCd+e+ + f + +++++ CA03g31380 7 RIVDPRKKKVLLDKRLESLYKKAKHLEILCDIEIGMFFFTPgDQNIFA 54 778889999*************************99888763445555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.115 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.23E-10 | 6 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-9 | 7 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGVRPSRIVD PRKKKVLLDK RLESLYKKAK HLEILCDIEI GMFFFTPGDQ NIFAWPSLTQ 60 ATDRVKNYLA SLDKQRPIKI VKHEDFLQSV LNTKEGKINQ LEKIVDKKET EYNLNQLVEA 120 RKRFDELEVR EIRALINLFA VKRAQLNERA KQLNENVETE IDSNDYNDGE ENDGHL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016566672.1 | 1e-124 | PREDICTED: agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A2G3A2V9 | 1e-125 | A0A2G3A2V9_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014105 | 6e-55 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 2e-14 | AGAMOUS-like 96 |