PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g31140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1137aa MW: 123114 Da PI: 8.1807 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 18.4 | 4.6e-06 | 335 | 353 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+k+CH GpC+ C+ CA03g31140 335 CGRHRCEKTCHVGPCGHCQ 353 ******************7 PP | |||||||
2 | zf-NF-X1 | 16.2 | 2.4e-05 | 399 | 416 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C +lCH+GpC+ C CA03g31140 399 CGNHICRELCHPGPCGDC 416 ****************99 PP | |||||||
3 | zf-NF-X1 | 17.9 | 6.8e-06 | 457 | 474 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H C++ CH G+C pC CA03g31140 457 CGVHLCEAVCHSGDCAPC 474 ****************** PP | |||||||
4 | zf-NF-X1 | 18.6 | 4.2e-06 | 553 | 571 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC CA03g31140 553 CGQHSCESLCHSGHCPPCL 571 ******************6 PP | |||||||
5 | zf-NF-X1 | 17 | 1.3e-05 | 663 | 678 | 1 | 16 |
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG H C ++CH+ pC+ CA03g31140 663 CGLHACARTCHPSPCD 678 ***************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 3.04E-6 | 156 | 228 | No hit | No description |
PROSITE profile | PS50016 | 8.814 | 165 | 226 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.494 | 168 | 224 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 168 | 223 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 3.82E-6 | 257 | 318 | No hit | No description |
SMART | SM00438 | 0.023 | 280 | 298 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.5 | 282 | 297 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.14E-11 | 325 | 373 | No hit | No description |
SMART | SM00438 | 0.0071 | 335 | 354 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.7E-4 | 335 | 352 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.48E-7 | 389 | 434 | No hit | No description |
SMART | SM00438 | 0.0014 | 399 | 418 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.3E-4 | 399 | 416 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.95E-13 | 447 | 495 | No hit | No description |
SMART | SM00438 | 5.7E-4 | 457 | 476 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.9E-5 | 457 | 474 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 180 | 515 | 549 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 19 | 515 | 526 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.70E-9 | 543 | 595 | No hit | No description |
SMART | SM00438 | 2.0E-4 | 553 | 572 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.0E-4 | 553 | 570 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.98E-4 | 600 | 648 | No hit | No description |
SMART | SM00438 | 0.34 | 610 | 628 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.031 | 663 | 693 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0013 | 663 | 678 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.77E-5 | 691 | 740 | No hit | No description |
Pfam | PF01422 | 22 | 695 | 721 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.013 | 702 | 723 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 1.7E-5 | 830 | 894 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 2.6E-4 | 943 | 988 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1137 aa Download sequence Send to blast |
MSFPAQNNRR NNNNNSNHRP GRNNNNNNNS NPVQGGGARR EWVARGSNVT NAVSFSPAPI 60 AAVVIPGFGV DVSTSGGNGR ENENVAVGQV NRNRNQGYVE PKFNRGVYGN QRRERGRGRG 120 REGYNNYQEN RVERAVRGRV NEERVKDPNL PQLVQEIEEK LLKGNVECMI CYDMVRRSAA 180 MWSCSSCYSI FHLSCIKKWA RAPTSVDTSA DKNQGFNWRC PGCQSVQLTS SRDIRYVCFC 240 GKRQEPPSDL YLTPHSCGEP CGKKLEKELP GDGLSEEDLC PHVCVLQCHP GPCPPCKAFA 300 PARSCPCGKE VITTRCSDRK SVLTCGQQCG KFLDCGRHRC EKTCHVGPCG HCQIVVNACC 360 FCKKKTEAVL CGDMGVKGDI KMENGVFSCN SACENKLNCG NHICRELCHP GPCGDCALLP 420 SKIKTCCCGK TRLEEERHSC LYPIPTCSKV CGKSLRCGVH LCEAVCHSGD CAPCLVPVTQ 480 RCRCGSTSRT VECYKTQSED EKFTCDRPCG QKKNCGRHRC SERCCPLSNP KNSITDGWNP 540 HFCSMPCEKK LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPLPSC 600 QLPCSVSQPC GHPPTHSCHF GDCLPCAVPV AKECVGGHVI LRNIPCGSKD IRCNKICGKT 660 RQCGLHACAR TCHPSPCDAT AGPSNGSRAS CGQTCGAPRR DCRHTCSALC HPFSPCPDVR 720 CEFPVTITCS CGRITANVPC DAGGQVVDHV FEASIIQKLP SPLQPIETNG KKVPLGQRKL 780 ICDDECAKME KKKVLSDAFG ITPPNLEALH FGENAAVCEV LGDLLRRDAK WVLSIEERCK 840 FLVLGRSRGG VNALKVHVFC PMSKEKRDAV RLIAARWKLS VNAAGWEPKR FIVIHVTPKS 900 KAPTRILGAK GCTVNNIAQP AVFDTPVDMD PRLVVALFDL PRDADISALV LRFGGECELV 960 WLNDKNALAV FSDPARAATA MRRLDQGSAY CGAAVVPQSG VASAGAAATN VWGVAGAVKD 1020 GGGVAALKGN PWKKAVVQEP HLRESPWDAE EWSKNPNDLA VAPSAWRVNE APSTASSNRW 1080 SILEPEITSS LPRASITMKE PISLPEGSGS VPSPKSQHVG VGDMADVVDD WDKAYD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238462 | 0.0 | AC238462.1 Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence. | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563097.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1U8FV96 | 0.0 | A0A1U8FV96_CAPAN; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2G3A2Y7 | 0.0 | A0A2G3A2Y7_CAPAN; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | PGSC0003DMT400036774 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9313 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |