PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g29970

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 504aa MW: 54270.3 Da PI: 5.9355

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g29970	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	156	216	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s CA03g29970 156 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 216 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	153	213	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-32	158	214	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	160	214	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	162	198	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MREVKDGEIK LFGKKIALPE NGKMLPVIVS GEDSDVGKSV SGSEVVTGEE SSTGSDRGDP 60 CLVDKEGNTS SESDGGSEYE KEDADKDQMT RELSEANLEE KYQSQIMEES ENPKSPSENK 120 SKTTTDDDSP TAKSSRTEGD QNDAAANSQQ KPLKKPDKIL PCPRCNSMDT KFCYYNNYNI 180 NQPRHFCKSC QRYWTAGGTM RNVPVGAGRR KNKNSASHCR HIMISEALEA ARIDPPNGFH 240 HPAFKPNGTV LSFGPDSPLC DSMASVLNLA ENKTPNGIRN GFYRPEHKNP SGLGGENGDD 300 CSSGSSVTTS NSMAEGVKNR APEAVMQTIN AFPSPVPCIP GVPWPFPFAA VPFPAVSPSG 360 YPMPFCPPPP YWNCSVPGPW SLPWLTAPSP TANQNGSGSA PNSPLGKHSR DGELLKPNNP 420 EGQKNSEGFV IVPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSSEKDHPA 480 TTFPALQANP AAFSRSLSFQ ERV*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MREVKDGEIK LFGKKIALPE NGKMLPVIVS GEDSDVGKSV SGSEVVTGEE SSTGSDRGDP  60
CLVDKEGNTS SESDGGSEYE KEDADKDQMT RELSEANLEE KYQSQIMEES ENPKSPSENK  120
SKTTTDDDSP TAKSSRTEGD QNDAAANSQQ KPLKKPDKIL PCPRCNSMDT KFCYYNNYNI  180
NQPRHFCKSC QRYWTAGGTM RNVPVGAGRR KNKNSASHCR HIMISEALEA ARIDPPNGFH  240
HPAFKPNGTV LSFGPDSPLC DSMASVLNLA ENKTPNGIRN GFYRPEHKNP SGLGGENGDD  300
CSSGSSVTTS NSMAEGVKNR APEAVMQTIN AFPSPVPCIP GVPWPFPFAA VPFPAVSPSG  360
YPMPFCPPPP YWNCSVPGPW SLPWLTAPSP TANQNGSGSA PNSPLGKHSR DGELLKPNNP  420
EGQKNSEGFV IVPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSSEKDHPA  480
TTFPALQANP AAFSRSLSFQ ERV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563247.1	0.0	PREDICTED: cyclic dof factor 1-like
Swissprot	Q8LFV3	2e-97	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A1U8FVQ5	0.0	A0A1U8FVQ5_CAPAN; Cyclic dof factor 3
TrEMBL	A0A2G3A275	0.0	A0A2G3A275_CAPAN; cyclic dof factor 1-like
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-55	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]