PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g29570
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 369aa    MW: 41050.5 Da    PI: 8.0248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g29570genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.41.9e-16234280455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  CA03g29570 234 VHNQSERRRRDRINQRMKALQRLVPNA-----SKTDKASMLDEVIDYLKQLQ 280
                 6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.9E-20228299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.057230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-20233308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-14234280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-9235284No hitNo description
SMARTSM003531.7E-17236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSHCTVPTWN PRHQRQERVV DTEEANKYPH VHNQQNQINH FLPMPSKFEE VAELTWEKGQ  60
LEMHGLGGIL SISQAKQTLG RAGDTLESIV HQATHHGQNQ DSLQNYDQND QDLKFRMCSG  120
GKWGESSQHM APPRATVLAK KRMRPSESDP QYGGAEDHGY TERSACASAS ATFCRENDTT  180
MVTWPSFDES SRSIKSKTAC DEDSACHGGG SENKEEEHET KRSNSSRRSR AAAVHNQSER  240
RRRDRINQRM KALQRLVPNA SKTDKASMLD EVIDYLKQLQ AQVQFMSSSA RNLAPQMMMP  300
LGMHQHIQMS LLARMGVGVG LGMGMGMFDM TALARAAAAA AXCCCRHNYP SVSYNSSPHS  360
SKSNDSSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-162HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563315.10.0PREDICTED: transcription factor UNE10 isoform X1
TrEMBLA0A2G3A2350.0A0A2G3A235_CAPAN; Uncharacterized protein
STRINGSolyc03g115540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-36bHLH family protein