PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g29270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24655.7 Da PI: 9.7446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.7e-16 | 40 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI++ s ++ r +lg+f+ aeeAa a++ a++ l+g CA03g29270 40 KKFVGVRQRP-SGRWVAEIKETS---QKLRLWLGTFDRAEEAALAYDSAARLLRG 90 589*******.7******99942...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.97E-31 | 40 | 100 | No hit | No description |
SMART | SM00380 | 7.4E-33 | 41 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-19 | 41 | 99 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.44 | 41 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 41 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 41 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-7 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-7 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MESSKSPSES NNSSKNIQEK QVTKTKTRTK PKPRSSNDGK KFVGVRQRPS GRWVAEIKET 60 SQKLRLWLGT FDRAEEAALA YDSAARLLRG RNAKTNFKYQ AEILKPHEEI NCSLFEKNPR 120 LYELLKHAIM RKHAGKCQNN ESLDKEEALV EESIVCEDQD RNKEEISRIQ LQGSSKVYSS 180 VIVAPSFSAS ITQSGREENH SQSNGQYFDC LLSRACK* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556214.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor SHINE 2-like | ||||
TrEMBL | A0A1U8FIS0 | 1e-159 | A0A1U8FIS0_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3A203 | 1e-159 | A0A2G3A203_CAPAN; ethylene-responsive transcription factor SHINE 2-like | ||||
STRING | XP_009762079.1 | 3e-89 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-16 | related to AP2 11 |