PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g28750
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 362aa    MW: 40693.5 Da    PI: 6.7983
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g28750genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.15.6e-2952167389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.......... 88 
                 g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk ++WLl++ k+ i++l+ ++ ++  ++   ++ +++ s+ ++ ++          
  CA03g28750  52 GGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYDLQDRLGLSQPSKVVDWLLEATKHDIDKLPPLPVPPGYFTrfqQPLHQEYSDIHHVQHllnatlpyhh 150
                 78*************************************************************777775554433333333333222224444444444 PP

         TCP  89 ................k 89 
                                 +
  CA03g28750 151 hfdvdnlrqkskgidvE 167
                 44443332222222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-2753183IPR005333Transcription factor, TCP
PROSITE profilePS5136928.77453111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNSSGNNFQT KQESGGTSDS RLASKTTSTP SSSRQWGAFK NPRIVRVSRT FGGKDRHSKV  60
CTIRGLRDRR IRLSVPTAVQ LYDLQDRLGL SQPSKVVDWL LEATKHDIDK LPPLPVPPGY  120
FTRFQQPLHQ EYSDIHHVQH LLNATLPYHH HFDVDNLRQK SKGIDVESGT SGKNKLIANS  180
NQQENHQEDD IGGYCHQVSA QSFFPLGNRS PNLPFNSYYQ WEPNSSLSLA NFGQYNSSSS  240
QIQESHDQND FPLSLASSSS SGSQLYFNPI ATTFQPVVPG PNYMANETDL RQLNHFNFLC  300
SSSQHHHVHP NNPIFPTTLS LINSPMKPFS LNDDDPRWSN SRDDDDDDDN DNQLPHEGRA  360
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1858112155Putative transcription factor PCF6
5zkt_B4e-1858112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563321.10.0PREDICTED: transcription factor TCP5
RefseqXP_016563322.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A1U8FVX90.0A0A1U8FVX9_CAPAN; transcription factor TCP5
TrEMBLA0A1U8FW090.0A0A1U8FW09_CAPAN; Transcription factor TCP13
STRINGXP_009781748.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5