PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g26920

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 294aa MW: 32629.2 Da PI: 7.8504

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g26920	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.5e-40	33	93	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++++kcprCdst+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s CA03g26920 33 HDHSIKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 93 57889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	27	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.966	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDSSSSPSGG DHHINLTCSR PIIVDQRRLR PPHDHSIKCP RCDSTHTKFC YYNNYSLTQP 60 RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSSKKSNTN ETLATTSTNN NNQNLPEPEM 120 PFPLHNHHFM SGTSSFVHHG NFMLDQNQAP IIDFMESKYE ALVGSSSRNQ DLFLGNGDNN 180 IGMMSNAGFG HDNIIAPNFP FGMASMNMDN VNNFGMLLPY ENNHHHHEEL QSMNNAVDVK 240 PNPKILSLEW HDQAGNKESS FGYNYSGSST GGLGSWTGLM NGCYGSSTTN PLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-82	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	1e-82	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563618.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
Swissprot	Q9FM03	1e-48	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A2G3A1E8	0.0	A0A2G3A1E8_CAPAN; Dof zinc finger protein DOF4.6
STRING	PGSC0003DMT400046598	1e-131	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4895	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	2e-45	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]