PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA03g25040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 91aa MW: 10474 Da PI: 9.0827 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.8 | 4.5e-14 | 15 | 76 | 17 | 82 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 ++p +fa + ++ ++++ led+sg++W+v++ +k++gr +++GW eF ++gL g f+v+ CA03g25040 15 YIPSTFAWSVSHL--TDQETYLEDSSGQRWRVRV--CKHDGRLAIKQGWPEFSAEHGLTLGNFLVL 76 89*****999755..4568***************..**************************9884 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.041 | 1 | 90 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.05E-9 | 2 | 79 | No hit | No description |
SuperFamily | SSF101936 | 1.2E-14 | 10 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-14 | 12 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-11 | 15 | 81 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 91 aa Download sequence Send to blast |
MSYFLVLISD ASFQYIPSTF AWSVSHLTDQ ETYLEDSSGQ RWRVRVCKHD GRLAIKQGWP 60 EFSAEHGLTL GNFLVLFKYL FKHGPKTLFK * |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567678.1 | 1e-35 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2 | ||||
TrEMBL | A0A2G2ZVZ1 | 6e-61 | A0A2G2ZVZ1_CAPAN; Uncharacterized protein | ||||
STRING | XP_009616981.1 | 2e-29 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |