PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g23190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17899.4 Da PI: 5.8798 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 1.9e-21 | 22 | 71 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++i+nk qv fskRr g++KKA+ELS+ C+++vavi+ s+ gkly + CA03g23190 22 EKISNKKSLQVAFSKRRGGLFKKASELSTSCGVQVAVIVESPAGKLYSFG 71 579********************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.717 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-28 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-26 | 15 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-24 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MENKEEETSK KKTLGRRKIP IEKISNKKSL QVAFSKRRGG LFKKASELST SCGVQVAVIV 60 ESPAGKLYSF GSPSVDSVID RFERTRLCFN NCSEVHEEEK GVMEKSNWWW EDVCPENLGL 120 EELEERMSDM QVLKNNLLKR IQDHDDLVMA DSFLNL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563959.1 | 1e-111 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8G7G4 | 1e-110 | A0A1U8G7G4_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3A0S1 | 1e-110 | A0A2G3A0S1_CAPAN; agamous-like MADS-box protein AGL62 | ||||
STRING | PGSC0003DMT400090024 | 9e-51 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-25 | AGAMOUS-like 62 |