PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g22350

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 263aa MW: 29898.8 Da PI: 7.9018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g22350	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.2	7.2e-45	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++i+k++PwdLp + e++ yfFs+++ ky++g+r+nrat gyWk tg dk+++++ ++ CA03g22350 14 LPPGFRFQPTDEEIVFQYLIRKTFSCPLPA-SIIPEINICKHDPWDLPGDI---EQDRYFFSSKEAKYRNGNRANRATIGGYWKPTGLDKQIICSkRKP 108 79**************************.89***********554...5689*****************************99974555 PP NAM 99 lvglkktLvfykg...rapkgektdWvmheyrl 128 vg+kktLvfykg +++++++tdW+mheyrl CA03g22350 109 IVGMKKTLVFYKGkttTSHHATRTDWIMHEYRL 141 6******87222456678*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-49	11	179	IPR003441	NAC domain
PROSITE profile	PS51005	49.142	14	179	IPR003441	NAC domain
Pfam	PF02365	7.5E-24	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDKFNFVKDG AIKLPPGFRF QPTDEEIVFQ YLIRKTFSCP LPASIIPEIN ICKHDPWDLP 60 GDIEQDRYFF SSKEAKYRNG NRANRATIGG YWKPTGLDKQ IICSKRKPIV GMKKTLVFYK 120 GKTTTSHHAT RTDWIMHEYR LAVIPKDSSS NFHGHFKKPS DQSSLVQIGN WVLCHIFLKK 180 RNGKCIQEIL EDDHHDDNYK AHEHSVQIAK PIVYYDFMRA DNLSDGSVTS SCSSSLSNDD 240 STEVSSSPSS LVEHEEATNQ PL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-39	12	184	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-39	12	184	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-39	12	184	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-39	12	184	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-39	12	184	18	173	NAC domain-containing protein 19
3swm_B	3e-39	12	184	18	173	NAC domain-containing protein 19
3swm_C	3e-39	12	184	18	173	NAC domain-containing protein 19
3swm_D	3e-39	12	184	18	173	NAC domain-containing protein 19
3swp_A	3e-39	12	184	18	173	NAC domain-containing protein 19
3swp_B	3e-39	12	184	18	173	NAC domain-containing protein 19
3swp_C	3e-39	12	184	18	173	NAC domain-containing protein 19
3swp_D	3e-39	12	184	18	173	NAC domain-containing protein 19
4dul_A	2e-39	12	184	15	170	NAC domain-containing protein 19
4dul_B	2e-39	12	184	15	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567737.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	5e-72	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G3A0J8	0.0	A0A2G3A0J8_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400011069	1e-149	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	6e-73	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]