PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g21000
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 634aa    MW: 69990.9 Da    PI: 4.6478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g21000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52281561128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp+G+rF+Ptdeelv++yL+ k++g + ++ +vi+evdi+k+ePwdLp +  v+++++ew+fF+++d+ky++g+r nrat++gyWkatgkd+++++kkg
  CA03g21000  28 LPVGYRFRPTDEELVNHYLRLKINGADSQV-SVIREVDICKLEPWDLPdMsVVESNDNEWFFFCPKDRKYQNGQRLNRATERGYWKATGKDRNITTKKG 125
                 799************************999.99**************96347788999***************************************** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g+kktLv+y grap+g++t+Wv+heyr+
  CA03g21000 126 AKIGMKKTLVYYIGRAPDGKRTHWVIHEYRA 156
                 *****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-5923179IPR003441NAC domain
PROSITE profilePS5100555.67828179IPR003441NAC domain
PfamPF023651.2E-2629155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MMAVLPGDNP IAAIPVDKQM GIPPLNSLPV GYRFRPTDEE LVNHYLRLKI NGADSQVSVI  60
REVDICKLEP WDLPDMSVVE SNDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI  120
TTKKGAKIGM KKTLVYYIGR APDGKRTHWV IHEYRATEKS LDGSHPGQGA FVLCRLFRKS  180
DLKQDEHVEN SNLDAEQNAS AAKSPTEDEL SEGATPLTVV QPLGDSDKSY AATFPKTKLY  240
GKQIPVESHS HSCIADDTED QMLDITSIPP AQDLEKELGN FCDPSSQPLD WKIFSPLHSQ  300
LQVELGSSYL QAPMNNDISA YPKEDVQFQY GTNALDINDF LDSVFVGSDE FSCEDSGQEL  360
ASHQIDTKNC SITGPMIKDS GSCSESEAEV TQRLAEPDFF DPEMLWGNYD QETAVKNEVN  420
SIAATMLEAR GAPYVSTDHA VGNSGFLQNT YPGHYGHPVS FGASQVPNFL KDGFNSVVSN  480
DSGSGTGIKL RPRPMHNQPD DMQSRPQGTA PRRIRLQMKM QVGPVECCTR PDSSQEAGSH  540
QAVTDGEKAS DEHNPTASDT THEEYEGVSG EVDDLSTRVK DADDSPVQES LDEPLKTVTK  600
LSSSSHIYMT KFLVVASLLV VFIGVWGCIR LYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-442718416170NO APICAL MERISTEM PROTEIN
1ut4_B1e-442718416170NO APICAL MERISTEM PROTEIN
1ut7_A1e-442718416170NO APICAL MERISTEM PROTEIN
1ut7_B1e-442718416170NO APICAL MERISTEM PROTEIN
4dul_A1e-442718416170NAC domain-containing protein 19
4dul_B1e-442718416170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5879930.0KU587993.1 Capsicum annuum transmembrane NAC transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564177.10.0PREDICTED: NAC domain-containing protein 62-like isoform X1
TrEMBLA0A172QZV10.0A0A172QZV1_CAPAN; NAC domain-containing protein 45
TrEMBLA0A1U8FYC60.0A0A1U8FYC6_CAPAN; NAC domain-containing protein 62-like isoform X1
STRINGPGSC0003DMT4000014980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-86TCV-interacting protein