PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g20220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 303aa    MW: 33184.7 Da    PI: 8.9123
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g20220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.1e-393595262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+
  CA03g20220 35 KEQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSN 95
                7899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-273287IPR003851Zinc finger, Dof-type
PfamPF027011.2E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1063993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDTSQWPQGI GVVKGVEPSS KAVVLPDQRK PRPQKEQAIN CPRCNSTNTK FCYYNNYSLS  60
QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK NKRSNNNSNN NNNSSSSNSS STSSSLSSSK  120
KLLSDLANPN DLNLTYNPIS ATAAVATTST AGNFSNFSEF MALPLIHPAN STSSFMPNNL  180
YTSSTGLPNL HDLKSSSLNF SLDGFENGYG SLQGGDQEAK LFFPMDDLKI NVSTANDQFE  240
ENREQAAADQ SNGFWNGMLG GXXXXXXXXX XXXXXXXXXX XIRGGVYFNF ISFVFFKVIF  300
TG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9717087e-87AB971708.1 Nicotiana tabacum NtBBF1 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567779.10.0PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
TrEMBLA0A2G2ZZX80.0A0A2G2ZZX8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000477051e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-38Dof family protein