PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g19820
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 386aa    MW: 43525.4 Da    PI: 8.6582
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g19820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26073.44.2e-23797191
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                +C +C  +++kC ++C ++ ++p ++ ++++n++++FG +n  +++++++++ r+++++s +yeA+ r++dP++G ++ i+ lqq+l+++k
  CA03g19820  7 SCPVCHSQKKKCGTKCKFRNHLPPQKDETYKNIEQVFGLANFERFYDRVEPQWRDALIDSYAYEANERIKDPIHGITKDITLLQQRLANTK 97
                69************************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2286106IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-20797IPR004883Lateral organ boundaries, LOB
PfamPF008996.2E-794223IPR000594THIF-type NAD/FAD binding fold
Gene3DG3DSA:3.40.50.7208.2E-2396376IPR016040NAD(P)-binding domain
SuperFamilySSF695729.42E-2797331IPR000594THIF-type NAD/FAD binding fold
PRINTSPR018495.3E-7105129IPR000011Ubiquitin/SUMO-activating enzyme E1
PRINTSPR018495.3E-7226253IPR000011Ubiquitin/SUMO-activating enzyme E1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006464Biological Processcellular protein modification process
GO:0008641Molecular Functionsmall protein activating enzyme activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MTRTCKSCPV CHSQKKKCGT KCKFRNHLPP QKDETYKNIE QVFGLANFER FYDRVEPQWR  60
DALIDSYAYE ANERIKDPIH GITKDITLLQ QRLANTKRLG TANVLVNGLA GCTVEFCKHI  120
VVAGVKSLTL NDDRMITQDL LYGNSLIKPN EEFHRDKTIA QVCSKSLSKF NSKASIHVLQ  180
GDILNLSAAD FEKFDTVIIS CCSKIKRREV NSRCRQLTDP IAFYSVQCRG SLAEIFVDLK  240
SHTVCERLFG QDLKSIMEFC SFEEAIAVPW KTLPKGVSEI FLAMSVAENF EATHRRNVGK  300
LSATDFQNLK TFKDVLCDKQ VVYFTHIKFD FLVLVSNFLA KKMQQFNHNH ISSATLEKLT  360
GITACNIHSI VGAILAQVIC LGASY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-147931197LOB family transfactor Ramosa2.1
5ly0_B2e-147931197LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605566.11e-129PREDICTED: SUMO-activating enzyme subunit 1B-1-like
RefseqXP_016442044.11e-129PREDICTED: SUMO-activating enzyme subunit 1B-1-like
TrEMBLA0A2G2ZZX90.0A0A2G2ZZX9_CAPAN; 40S ribosomal protein S12
STRINGXP_009605566.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-17LOB domain-containing protein 25