PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g18670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 642aa    MW: 70794.9 Da    PI: 7.1571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g18670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.28.1e-1082746413374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + ++e+A+a+s+g++  a ++L+rls+ a+ +g++ qRl+ay++ AL++r++     +    p+ e    +s e++  ++ ++evsP++k+++++aN a
  CA03g18670 274 QSIIEAATAISEGKTDVAVEILTRLSQVANVRGSSDQRLTAYMVTALRSRVNP----TDYPPPVLEL---HSREHTDTTQNLYEVSPCFKLGFMAANLA 365
                 6789************************************************9....2222333344...48889999999****************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ileav+ +  +++H+iDfdi+qG+Q++ Ll+aLa+++ ++p+ l+iT++ +++ g  e+l+++g  L+ +A+++gv + fn+ +a ++++l+ e+L ++
  CA03g18670 366 ILEAVADHpfNKLHVIDFDIGQGGQYLHLLHALAAKKsDKPAILKITAFTEQAGGVDERLNSIGIELKVVANRVGVCLFFNI-TACKITELNREKLGIE 463
                 *******999************************777356669********8888**************************9.899************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveqe+++n+++Fl+r+ ea+ +y alfdsl+a+++r+++er+ +E+  l+r+  n
  CA03g18670 464 PDEALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQEMNCNTAPFLARVNEACGHYGALFDSLDATVSRDNSERVRIEEG-LSRKMGN 561
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vaceg++r+er+e ++kWr+rl++aGF+p p+s+ +a++ ++ l+     + g++v+e++g +++gW++r L+++SaWr
  CA03g18670 562 SVACEGRDRVERCEVFGKWRARLGMAGFGPRPMSQLVANSLRAKLNSGTrgNPGFTVNEQNGGICFGWMGRILTVASAWR 641
                 ***************************************999999875546899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.95246619IPR005202Transcription factor GRAS
PfamPF035142.8E-105274641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MNNNTNSNNS LRPLYSSPLS GILPDPVTQI VHHGRPSLMG KRSLAEFQQQ QQLHFLQQQQ  60
QQQQQNQQQQ QQMMLLQQQQ QQQQGLGFYL RNVKPRSYQQ ASPISPLSPV DFSVAAAAAS  120
SISSEFSSIS SNSNASTRHP LPVMLQLRSQ QHGFLTPPIH NYSTGVSSLN PVHNRASMGV  180
QQQLLSQESD KKMMNCLQEL EKQLLDDNDE EEGDTVSVVT NNEWSETIQN LITPCQNPNQ  240
NQNQIQKLAS LSPSSSTSSC ASSTESPPIS CPKQSIIEAA TAISEGKTDV AVEILTRLSQ  300
VANVRGSSDQ RLTAYMVTAL RSRVNPTDYP PPVLELHSRE HTDTTQNLYE VSPCFKLGFM  360
AANLAILEAV ADHPFNKLHV IDFDIGQGGQ YLHLLHALAA KKSDKPAILK ITAFTEQAGG  420
VDERLNSIGI ELKVVANRVG VCLFFNITAC KITELNREKL GIEPDEALAV NFAFKLYRLP  480
DESVTTENLR DELLRRVKAL SPKVVTVVEQ EMNCNTAPFL ARVNEACGHY GALFDSLDAT  540
VSRDNSERVR IEEGLSRKMG NSVACEGRDR VERCEVFGKW RARLGMAGFG PRPMSQLVAN  600
SLRAKLNSGT RGNPGFTVNE QNGGICFGWM GRILTVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-422696419375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564536.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A2G2ZZA20.0A0A2G2ZZA2_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000262400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-149SCARECROW-like 8