PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g18670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 642aa MW: 70794.9 Da PI: 7.1571 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 352.2 | 8.1e-108 | 274 | 641 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + ++e+A+a+s+g++ a ++L+rls+ a+ +g++ qRl+ay++ AL++r++ + p+ e +s e++ ++ ++evsP++k+++++aN a CA03g18670 274 QSIIEAATAISEGKTDVAVEILTRLSQVANVRGSSDQRLTAYMVTALRSRVNP----TDYPPPVLEL---HSREHTDTTQNLYEVSPCFKLGFMAANLA 365 6789************************************************9....2222333344...48889999999****************** PP GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 Ileav+ + +++H+iDfdi+qG+Q++ Ll+aLa+++ ++p+ l+iT++ +++ g e+l+++g L+ +A+++gv + fn+ +a ++++l+ e+L ++ CA03g18670 366 ILEAVADHpfNKLHVIDFDIGQGGQYLHLLHALAAKKsDKPAILKITAFTEQAGGVDERLNSIGIELKVVANRVGVCLFFNI-TACKITELNREKLGIE 463 *******999************************777356669********8888**************************9.899************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 p+EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveqe+++n+++Fl+r+ ea+ +y alfdsl+a+++r+++er+ +E+ l+r+ n CA03g18670 464 PDEALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQEMNCNTAPFLARVNEACGHYGALFDSLDATVSRDNSERVRIEEG-LSRKMGN 561 *******************************************************************************************.******* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 vaceg++r+er+e ++kWr+rl++aGF+p p+s+ +a++ ++ l+ + g++v+e++g +++gW++r L+++SaWr CA03g18670 562 SVACEGRDRVERCEVFGKWRARLGMAGFGPRPMSQLVANSLRAKLNSGTrgNPGFTVNEQNGGICFGWMGRILTVASAWR 641 ***************************************999999875546899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.95 | 246 | 619 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-105 | 274 | 641 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MNNNTNSNNS LRPLYSSPLS GILPDPVTQI VHHGRPSLMG KRSLAEFQQQ QQLHFLQQQQ 60 QQQQQNQQQQ QQMMLLQQQQ QQQQGLGFYL RNVKPRSYQQ ASPISPLSPV DFSVAAAAAS 120 SISSEFSSIS SNSNASTRHP LPVMLQLRSQ QHGFLTPPIH NYSTGVSSLN PVHNRASMGV 180 QQQLLSQESD KKMMNCLQEL EKQLLDDNDE EEGDTVSVVT NNEWSETIQN LITPCQNPNQ 240 NQNQIQKLAS LSPSSSTSSC ASSTESPPIS CPKQSIIEAA TAISEGKTDV AVEILTRLSQ 300 VANVRGSSDQ RLTAYMVTAL RSRVNPTDYP PPVLELHSRE HTDTTQNLYE VSPCFKLGFM 360 AANLAILEAV ADHPFNKLHV IDFDIGQGGQ YLHLLHALAA KKSDKPAILK ITAFTEQAGG 420 VDERLNSIGI ELKVVANRVG VCLFFNITAC KITELNREKL GIEPDEALAV NFAFKLYRLP 480 DESVTTENLR DELLRRVKAL SPKVVTVVEQ EMNCNTAPFL ARVNEACGHY GALFDSLDAT 540 VSRDNSERVR IEEGLSRKMG NSVACEGRDR VERCEVFGKW RARLGMAGFG PRPMSQLVAN 600 SLRAKLNSGT RGNPGFTVNE QNGGICFGWM GRILTVASAW R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-42 | 269 | 641 | 9 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016564536.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
TrEMBL | A0A2G2ZZA2 | 0.0 | A0A2G2ZZA2_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026240 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-149 | SCARECROW-like 8 |