PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g16800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 288aa MW: 30086.9 Da PI: 10.1909 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.3 | 2e-36 | 10 | 108 | 3 | 101 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaksa 94 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++ + ++s ++++ ++ CA03g16800 10 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsvngtlkI------PTTSPSTNNNEGES 102 5699***********************************************************8888844432222221......11111111111111 PP TCP 95 akskksq 101 ++k+++ CA03g16800 103 -STKRRK 108 .111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-30 | 14 | 103 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.312 | 15 | 69 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MQLQKAEKQP VKRSSKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS EGETIRWLLE 60 RAEPAIIAAT GTGTVPAIAV SVNGTLKIPT TSPSTNNNEG ESSTKRRKRP ANSEFVEVHE 120 ASNFAPVAPI APQGLLPVWP MGSGNGHGLV STTAITGGTA AFYVLQPGTS SPTTYAAGPH 180 LWATPIFNVP TRPISNFVSA MQPGIGYPAG VPVSAVASEV QLSTSPASKS DGLGTVGSAI 240 APSSSSTGAT TQMLRDFSLE IYDKKKELQF MVGSGSSEND EASSSKS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016564725.1 | 0.0 | PREDICTED: transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 3e-68 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A2G2ZYU5 | 0.0 | A0A2G2ZYU5_CAPAN; Transcription factor PCF2 | ||||
STRING | PGSC0003DMT400062327 | 1e-144 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 2e-70 | TCP family protein |