PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g16800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 288aa    MW: 30086.9 Da    PI: 10.1909
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g16800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.32e-36101083101
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaksa 94 
                 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++               + ++s ++++ ++
  CA03g16800  10 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsvngtlkI------PTTSPSTNNNEGES 102
                 5699***********************************************************8888844432222221......11111111111111 PP

         TCP  95 akskksq 101
                  ++k+++
  CA03g16800 103 -STKRRK 108
                 .111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3014103IPR005333Transcription factor, TCP
PROSITE profilePS5136926.3121569IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQLQKAEKQP VKRSSKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS EGETIRWLLE  60
RAEPAIIAAT GTGTVPAIAV SVNGTLKIPT TSPSTNNNEG ESSTKRRKRP ANSEFVEVHE  120
ASNFAPVAPI APQGLLPVWP MGSGNGHGLV STTAITGGTA AFYVLQPGTS SPTTYAAGPH  180
LWATPIFNVP TRPISNFVSA MQPGIGYPAG VPVSAVASEV QLSTSPASKS DGLGTVGSAI  240
APSSSSTGAT TQMLRDFSLE IYDKKKELQF MVGSGSSEND EASSSKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564725.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT893e-68TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A2G2ZYU50.0A0A2G2ZYU5_CAPAN; Transcription factor PCF2
STRINGPGSC0003DMT4000623271e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-70TCP family protein