PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g16650

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 992aa MW: 111147 Da PI: 7.3623

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g16650	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.1	1.1e-08	225	278	22	75
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ CA03g16650 225 GRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ 278 67888999999*************************************975444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.510.10	1.2E-6	817	938	No hit	No description
CDD	cd00180	1.03E-15	840	976	No hit	No description
SuperFamily	SSF56112	1.02E-16	840	975	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MDENKGDTTK KQPQQHLSNS PADPHDQDSP DNTILQQQQQ QPQSVVSGAP YISSSLYNIP 60 GGAATTSVSF EQQQQFEVVN TKRPRYTASQ WKFIPSSAQQ QHHQQQKTSM LSAESSPISP 120 SAHTIATNPQ TQQAASSSDT ASSPSHSPRP SSASGQEPSK SEGGEQVHQQ FRKGKYVSPV 180 WKPNEMLWLA RAWKIQYQGG GGSSSELGNL EGSPGIAGSG TAAAGRGKTR ADKDREVAEF 240 LNRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGAEREQIG KSYFRLSPYE RKIHRLPASF 300 DEEVFEELSQ FMCPRMRTPQ TRIGTQPNIS DDIRTPPTVT KSLPPPPPFR EDELPLSGRA 360 KQLVMPSGTE TLIHGTRGGF LGFESPSSSL DIIGGGPSSS TSKELRRIGK IRMIWEESVS 420 LWAEEGEHHR GRVKLQGSSF LNADEITFLD DSMVASTMEA FEDGPMKGFS VDRFPSGVQL 480 KVFGRRKSSS ALAPPGSHER LQLPSSEFTI RSTAPWEFQD PTEYYVGCLR SPPPTLPSLF 540 ELSWHLQQPP PEELRFPLRR DVFKDLPQGK ELFFTTSTEL LDCRGITYDV LTSIMRSNPS 600 LTAATATDRD SYIGLWDDCI NRIISKFCSI EMVFVRKSSS SLAETVQDQW PNVTAFLRNF 660 CLWRGEETDQ LREGQPDPSS FIVEKLFWTY MDLPYVLGYY AIGFIVTFCA LSRSQDRIIR 720 TDLYTVDLST PVERLKALVP CWRIAGLLPL LADKCFHYMS SNGSNFKHLP YTDFERTDLG 780 NGNFVEMTPN TVVRYFSSRR KWLAVKEIYD FLDHRIPHAE FVVRASEKDL ALVFKPRGCK 840 YKPTNCDQLI EALKQVTKAL VALHDLSFMH RDLGWDKVMR RSDRENEWFI TGFDEAVTAP 900 QLYPHGGATT TTGSGRHPPE MGRNYHGVKV DVWGIGQLVK SCGLVGVPKL LRELQNRCLD 960 HNPEQRPTAA DCYRHLLQLQ SSMSAAAAGG Y*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MDENKGDTTK KQPQQHLSNS PADPHDQDSP DNTILQQQQQ QPQSVVSGAP YISSSLYNIP  60
GGAATTSVSF EQQQQFEVVN TKRPRYTASQ WKFIPSSAQQ QHHQQQKTSM LSAESSPISP  120
SAHTIATNPQ TQQAASSSDT ASSPSHSPRP SSASGQEPSK SEGGEQVHQQ FRKGKYVSPV  180
WKPNEMLWLA RAWKIQYQGG GGSSSELGNL EGSPGIAGSG TAAAGRGKTR ADKDREVAEF  240
LNRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGAEREQIG KSYFRLSPYE RKIHRLPASF  300
DEEVFEELSQ FMCPRMRTPQ TRIGTQPNIS DDIRTPPTVT KSLPPPPPFR EDELPLSGRA  360
KQLVMPSGTE TLIHGTRGGF LGFESPSSSL DIIGGGPSSS TSKELRRIGK IRMIWEESVS  420
LWAEEGEHHR GRVKLQGSSF LNADEITFLD DSMVASTMEA FEDGPMKGFS VDRFPSGVQL  480
KVFGRRKSSS ALAPPGSHER LQLPSSEFTI RSTAPWEFQD PTEYYVGCLR SPPPTLPSLF  540
ELSWHLQQPP PEELRFPLRR DVFKDLPQGK ELFFTTSTEL LDCRGITYDV LTSIMRSNPS  600
LTAATATDRD SYIGLWDDCI NRIISKFCSI EMVFVRKSSS SLAETVQDQW PNVTAFLRNF  660
CLWRGEETDQ LREGQPDPSS FIVEKLFWTY MDLPYVLGYY AIGFIVTFCA LSRSQDRIIR  720
TDLYTVDLST PVERLKALVP CWRIAGLLPL LADKCFHYMS SNGSNFKHLP YTDFERTDLG  780
NGNFVEMTPN TVVRYFSSRR KWLAVKEIYD FLDHRIPHAE FVVRASEKDL ALVFKPRGCK  840
YKPTNCDQLI EALKQVTKAL VALHDLSFMH RDLGWDKVMR RSDRENEWFI TGFDEAVTAP  900
QLYPHGGATT TTGSGRHPPE MGRNYHGVKV DVWGIGQLVK SCGLVGVPKL LRELQNRCLD  960
HNPEQRPTAA DCYRHLLQLQ SSMSAAAAGG Y*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016557134.1	0.0	PREDICTED: uncharacterized protein LOC107856675
TrEMBL	A0A1U8FN01	0.0	A0A1U8FN01_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZZ15	0.0	A0A2G2ZZ15_CAPAN; uncharacterized protein LOC107856675
STRING	Solyc03g006900.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-08	Trihelix family protein