PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g16550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 109aa MW: 12132.8 Da PI: 11.295 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.5e-15 | 43 | 91 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+ +g+Wv+ +r+p +k+ r++lg+f tae a+a++ +++l+g CA03g16550 43 YRGVRQSN-SGKWVCKVREP---NKKSRIWLGTFPTAELVARAHDVVALSLRG 91 9****877.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-10 | 41 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-17 | 42 | 101 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.02 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-27 | 42 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-21 | 42 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.73E-25 | 43 | 101 | No hit | No description |
PRINTS | PR00367 | 5.7E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MSAHSNCSPN RAILSDEDVI LASNNPKRSA ESKKFRETRH PAYRGVRQSN SGKWVCKVRE 60 PNKKSRIWLG TFPTAELVAR AHDVVALSLR GRSACINFAD STWRLARP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311786.1 | 4e-55 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 5e-46 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2G2ZYW6 | 2e-73 | A0A2G2ZYW6_CAPAN; Dehydration-responsive element-binding protein 1D | ||||
STRING | PGSC0003DMT400037122 | 4e-53 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-48 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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